Vibrio sp. STUT-A16: VspSTUT16_01900
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Entry
VspSTUT16_01900 CDS
T10420
Symbol
groL1
Name
(GenBank) 60 kDa chaperonin 1
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VspSTUT16_01900 (groL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vis03019
]
VspSTUT16_01900 (groL1)
03110 Chaperones and folding catalysts [BR:
vis03110
]
VspSTUT16_01900 (groL1)
03029 Mitochondrial biogenesis [BR:
vis03029
]
VspSTUT16_01900 (groL1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vis04147
]
VspSTUT16_01900 (groL1)
Enzymes [BR:
vis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
VspSTUT16_01900 (groL1)
Messenger RNA biogenesis [BR:
vis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
VspSTUT16_01900 (groL1)
Chaperones and folding catalysts [BR:
vis03110
]
Heat shock proteins
HSP60 / Chaperonin
VspSTUT16_01900 (groL1)
Mitochondrial biogenesis [BR:
vis03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
VspSTUT16_01900 (groL1)
Exosome [BR:
vis04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
VspSTUT16_01900 (groL1)
Exosomal proteins of other body fluids (saliva and urine)
VspSTUT16_01900 (groL1)
Exosomal proteins of breast cancer cells
VspSTUT16_01900 (groL1)
Exosomal proteins of colorectal cancer cells
VspSTUT16_01900 (groL1)
Exosomal proteins of bladder cancer cells
VspSTUT16_01900 (groL1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-ProteinID:
BDR16844
LinkDB
All DBs
Position
1:246790..248436
Genome browser
AA seq
548 aa
AA seq
DB search
MAAKDVKFGNDARVKMLEGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREI
ELEDKFQNMGAQMVKEVASKANDAAGDGTTTATVLAQSIVNEGLKAVAAGMNPMDLKRGI
DKAVAAAVEQLKELSVECNDTKAIAQVGTISANSDASVGNIIAEAMERVGRDGVITVEEG
QALQDELDVVEGMQFDRGYLSPYFINNQESGSVDLENPFILLVDKKISNIRELLPTLEAV
AKASRPLLIIAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTV
ISEEIGLELEKVALEDLGQAKRVSITKENTTIIDGIGEEEMISGRVAQIRQQIEDATSDY
DKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALAATRAAVEEGVVAGGGVALI
RAASKIAHLTGDNEEQNVGIRVALRAMEAPIRQITKNAGEEDSVVANNVKAGEGSYGYNA
ATGEYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKDAPAMPDMGGMGG
MGGMGGMM
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggctgctaaagacgttaaatttggtaatgacgcacgagttaaaatgctagaaggtgta
aacgttctggctgacgcagtaaaagtaacactgggtcctaaaggacgtaatgtcgttcta
gacaaatcttttggtgcaccgactatcacgaaagatggtgtatcagtagcgcgtgaaatt
gaactggaagataaattccagaacatgggcgcacaaatggttaaagaagttgcgtctaaa
gcaaacgacgcggcaggtgacggtacaacaacagcaacagtactagcacaatctatcgta
aacgaaggtctaaaagcagtcgcagcgggtatgaacccaatggaccttaagcgtggtatc
gacaaagcagtagcagcagcagtagagcaactaaaagagctttctgttgaatgtaacgac
acgaaagcgatcgcacaggttggtactatctctgcaaactcagacgcaagcgtaggtaac
atcattgctgaagcaatggagcgtgtgggccgtgatggcgttatcactgttgaagaaggt
caggcgctacaagatgagctagacgtagtagaaggtatgcagttcgaccgcggttaccta
tctccttacttcatcaacaaccaagagtcaggcagtgttgatctagaaaacccattcatc
ctgctagttgataagaagatctcaaacattcgtgaacttcttccaacgctagaagctgta
gcgaaagcgtctcgtccactgcttatcatcgcagaagatgtagaaggcgaagcgctagca
acattggttgtcaacaacatgcgtggcatcgtgaaagttgctgcagtgaaagcacctggc
ttcggtgaccgtcgtaaagcaatgctacaagacatcgctatcctaactggcggtactgtg
atttctgaagaaatcggtctagagcttgaaaaagtagcactagaagatctaggtcaagcg
aagcgtgtttctatcacgaaagaaaacacgactatcatcgatggtatcggtgaagaagag
atgatctctggtcgcgtagctcaaattcgtcaacaaatcgaagacgcaacttcagactac
gacaaagagaaactacaagagcgcgtagcgaaactggctggcggtgttgcagtaatcaaa
gttggtgcagcaactgaagttgaaatgaaagagaagaaagaccgtgtagaagatgcgcta
gccgcaactcgtgcagcggttgaagaaggtgttgttgctggtggtggtgttgcacttatc
cgcgcggcatctaagattgctcacctaacgggtgacaacgaagagcaaaacgttggtatc
cgcgttgcactacgtgcaatggaagcgccaatccgtcaaatcacgaagaacgcaggtgag
gaagactcagtggttgcgaacaacgtgaaagcgggtgaaggctcttacggttacaacgcg
gcaacaggcgaatacggcgacatgctagagatgggtattctagacccaacgaaagtaact
cgttctgcgctacagttcgcagcatcggttgcgggtctgatgatcacgactgaagcaatg
gttactgacctaccgcaaaaagacgcaccagcgatgcctgacatgggcggtatgggtggc
atgggcggtatgggtggcatgatgtaa
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