Vibrio sp. STUT-A16: VspSTUT16_03200
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Entry
VspSTUT16_03200 CDS
T10420
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
vis Vibrio sp. STUT-A16
Brite
Messenger RNA biogenesis [BR:
vis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VspSTUT16_03200
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GFIT
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NCBI-ProteinID:
BDR16974
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Position
1:407895..409904
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AA seq
669 aa
AA seq
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MRYTPTLKLSTRLVAFVTMIVICAMFILFVGGTLSFKRLGQEYLTHYLEGIVEVVDKEME
DPDAAYSMQRWMPKMLQASNIVEMTLSTNNAVVYRFKDTSHQMEASVLFETEYQLTHNQD
YTIHFKAIPPYLGYSYSMQALWSITLAVILIIFCLMRGVAWLKEQLEGSEMLEERGRMIL
AGRVEQYAKGDKKEWPYTASEALDVLIEELQDARQERSRFDTFIRTQTFLDKLTGTANRV
LFDSKLESALLESGARGAVLLVRIQDWKLVEEEQDKQITDEFIVEVGSLLSNLVQRYPDV
VFSRYYDADFALFLPHQSAKDVANLASQCIRQLEKLIPPEPLDPDNWCHIGITTYKEGER
HSQIIDEAETALRSAQLQNNNNWSRFKKWNHDEEARGSVRWRTLFDTALTPENVILYAQS
VHPISDATHKKSLYEELTCRIRDPENGIVKASRFISAIRQVGYEAQMDKSVINKFLREFK
DNFDNSRSYALNLNVTPFSNREYFKWFRDELLQLSREQRKCLSFEFVEAQFVRHLDFMRP
VAKMLAGLGCHLMVGQAGRTIVSTHYLKEVDIRYLKLHRSLVAKIDQRHENQLFVRSMLG
AAANSKTKIIAVGIENQNELNTLIELGVYGGQGRYFSAEQQFLPRPQALPSSQSESQVKL
GRRNRWRKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaggtataccccaactcttaagttaagcacacggctggtggcttttgtcaccatgatc
gtcatctgcgccatgtttatcttgtttgtcggtggcaccctctcttttaaacgtcttggg
caggaatatctcacccattatttagaagggatcgtagaggtggtcgacaaggagatggaa
gatcctgacgctgcttattctatgcagcgctggatgccgaaaatgctgcaggcttccaat
attgtcgaaatgacattgtcgaccaacaatgcggttgtttatcgcttcaaagatacttct
catcaaatggaagcgtcagtcttgtttgagacagaataccaactgactcacaatcaagat
tacacgattcattttaaagcgatcccgccttacttaggttacagctactcaatgcaggcg
ctttggtcgatcacgcttgccgttatcctgatcatcttctgtttaatgcgcggtgttgcg
tggcttaaggagcaattagaaggctctgaaatgctcgaagagcgaggcaggatgatcctt
gctggtcgggtagagcagtatgcaaaaggtgacaaaaaagaatggccttatactgccagt
gaagcgctcgatgtattaattgaagagttacaagatgcgcgtcaagagcgaagccgattt
gatacctttattcgaactcaaaccttccttgataagttaacaggtaccgccaatcgagtg
ctatttgatagcaaactggaatcggcgttactagaaagtggggctcgcggtgccgtgttg
ctggtgcgcattcaagattggaagttggttgaagaagagcaagataagcaaataacggat
gagtttattgttgaagttgggagtttattatccaacttagttcagcgataccctgatgtt
gtgttttctcgttattacgatgctgattttgcgttatttctgccgcatcaaagtgccaaa
gatgtggctaatttggcatcacaatgcattcgccagttagaaaaattaattccgccagag
ccactcgacccagacaactggtgccatataggcatcactacttataaagagggtgagcga
cacagccaaatcatcgatgaagcagagacagctttgcgtagtgcgcaactacaaaataac
aataattggagtcgcttcaaaaaatggaaccacgatgaagaagctcgcggaagtgtgagg
tggagaacgttatttgacacagcacttacaccagaaaatgtgatactctacgcacaatct
gtgcacccaataagtgacgcaacgcataaaaaatcattatatgaagagttaacatgtcgg
attcgcgatcctgagaatggcattgttaaagcgtctcggtttatttctgcgatcagacag
gttggttatgaagcgcaaatggataagtcagttattaataaattcttaagagaatttaag
gataattttgataactcaagatcgtatgcgctcaatttgaatgtaacgcctttttctaac
cgagagtactttaaatggtttcgtgatgaactcttacagttgtcacgtgaacagagaaag
tgtctcagttttgagtttgttgaagcacaatttgtaagacacttagactttatgcgacca
gtcgctaaaatgctggccggtttagggtgccacttaatggttgggcaggctggacggacc
atcgtcagcactcactatttaaaagaagtggatattcgttaccttaaacttcatcgcagt
ttagtagcaaaaatcgaccagcgacatgagaaccagctatttgtccgcagcatgctaggt
gctgcggcaaacagtaaaactaaaatcatagcagtgggaattgagaatcaaaacgagctc
aacacgttaattgagctcggggtttatggtgggcaagggcgctacttctctgcagagcag
cagtttcttcctcgtccacaagcattgccaagttctcaatcagaatcccaagtgaaattg
ggaagacgaaatcgctggcgtaaaaaataa
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