Vibrio sp. STUT-A16: VspSTUT16_03460
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Entry
VspSTUT16_03460 CDS
T10420
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vis Vibrio sp. STUT-A16
Brite
Transcription machinery [BR:
vis03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
VspSTUT16_03460 (rapA)
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
BDR17000
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Position
1:440423..443332
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AA seq
969 aa
AA seq
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MTFALGQRWISDTESDLGLGTVVAMDARTVTLMFAASEENRVYARNDAPVTRVTFNVGDV
IDCQEGWSLKVEEVLEDEGLYTYFGTREDTQETAVVLREIFLSNQIRFNKPQDKLYAGQI
DRMDNFVLRYRALTNQFEQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCIEAFA
DAENPFDTQQYVLCSLDFLRKSRKRFEQALEGEWDLLVVDEAHHLEWSQDKPSREYQVVE
GLAERTPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEEEQYAPVADAITSLF
SGEKLPDEAKNQITELLSEQDVEPLFRIIESEADEEAKASARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPARNVHLMPMDIPPQYTTSMRVAGMIGGKMSSEARAMKNLYPEEIFQEFE
GDDASWWQFDSRVNWLLEKVKEKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQNRDIDIHVPYLKGTSQAILARWFDEGLNAFAETCPTGRAVYDKYSDDLIEILASGD
TSTLDEIIEASAKMNKELKSQLEQGRDRLLEMHSNGGEKAQQIVEKIESTDGDTNLVTFA
LSLFDTIGLNQDDKGENALIVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMIQGGIDLLMSEGVGTSAVSLLKNKALPVGTILLELIYAVDAQAPKRSGIARFLPKT
PIRLMMDSRGNDLSAQVEFESFNRQLSPVNRHLGSKLVTSVQKDVHRLIEAGDNLIEAKV
EEVRKQAHQDMQHSLNAELERLQALKAVNPNIRDEEIEAIDAQIKELTGYINQAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttggggcagcgctggattagcgatacggaaagcgatttaggtttaggt
accgttgtagcaatggatgctcgtactgtgacattgatgtttgcagcgtcagaggaaaac
cgagtttacgcacgtaacgatgcacctgttacccgagtcacctttaacgttggtgatgtc
atcgactgccaagaaggttggtctctaaaagttgaagaagtactggaagatgaaggtcta
tacacctatttcggtactcgtgaagacacgcaagaaaccgccgttgttctgcgtgagatt
ttccttagtaaccaaattcgttttaataaacctcaagataagttgtacgccggtcaaatt
gatcgcatggacaactttgttctgcgttaccgtgcgctaaccaaccagtttgagcagcat
aagagcccaatgcgtggcctatgtggtatgcgtgcaggtttgatccctcatcagctttac
atcgcgcacgaagttggccgtcgccacgcgccacgcgtattactggcggatgaagttggt
ttgggtaaaaccatcgaagcgggcatgatcatccaccagcaagtgctgtctggccgtgca
gaacgtattttgattgtggtacctgaaacactgcaacatcaatggctggttgagatgatg
cgtcgtttcaacctgcatttctctatctttgacgaagagcgttgtatcgaagcattcgcg
gatgcagaaaacccatttgatacccagcaatacgtgctgtgttctttggacttcctacgc
aagagccgcaagcgttttgaacaagcactggaaggcgaatgggacctactggttgtcgat
gaagcgcatcaccttgagtggagccaagataaaccgagccgtgaataccaagtagtggaa
ggcttggctgaacgcactccgggcgtactgctactgacggcaacgccagaacagcttggt
cgtgagagccactttgctcgtctgcgcttgctggatcctgaccgtttctacgattatgaa
gcgtttgtcgaggaagaagagcaatacgcacctgtagcggatgcgattacttcacttttc
tctggtgaaaaactgcctgatgaagcgaaaaaccagattactgagttgttgtctgaacaa
gacgtagaaccacttttccgcattatcgaaagtgaagcggacgaagaagcgaaagcgtca
gcgcgccaagagttgatcgacaacttgatggatcgtcacggtacgggacgagttctgttc
cgtaacacacgtgcggctatcaaagggttccctgcgcgtaacgtgcacctgatgccaatg
gatatcccaccgcaatacaccacgtcaatgcgtgttgctgggatgatcggcggtaagatg
agttcggaagcacgtgcaatgaagaacctttacccagaagagatcttccaagaatttgaa
ggcgatgatgcaagctggtggcagtttgactcgcgcgtgaattggttacttgaaaaggta
aaagagaagcgcagcgagaaaattctggtgattgcctctcgtgcaagtacggctctgcaa
ttggagcaagcactgcgtgagcgtgaaggcattcgtgcgaccgtcttccatgaaggtatg
tcgatccttgagcgtgacaaagcagccgcttactttgcgcaagaagaaggtggtgcacag
gttcttatctgtagtgaaatcggctctgaaggtcgtaacttccagtttgccaaccaatta
gtcatgtttgacttgccgttcaaccctgacttgcttgagcaacgtatcggtcgtttggac
cgtatcggccagaaccgcgacatcgacattcatgttccttacctgaaaggtacctcgcaa
gccattcttgctcgctggtttgatgaaggtttaaacgcttttgcagaaacttgcccaaca
ggccgtgccgtttacgataagtactctgatgatctgattgaaatccttgcttctggtgac
accagcacgctagatgagatcattgaagcgtcagcaaaaatgaataaagagctgaaatcc
caattggagcaaggccgtgatcgcctattagaaatgcattcaaatggcggggaaaaagca
caacaaatcgttgagaaaattgaatcaaccgatggtgataccaatctggtcaccttcgca
ctttctctatttgacacgattggtttgaaccaagatgacaaaggcgaaaacgcactgatt
gtgaccccatctgagcacatgatggtaccaagctacccaggcctgccatacgaaggggcg
acgatcacgtttgatcgtgatacggctttatctcgtgaagatatgcactttatcagttgg
gagcacccaatgatccaaggtggtatcgatcttctgatgagtgaaggggtggggacgtct
gcggtatctctactgaaaaacaaagcgctaccagtcgggaccattcttcttgagttgatt
tacgcggtagatgcgcaagcgccaaaacgcagtggtatcgcgcgcttcttaccgaaaacg
ccaatccgtttaatgatggactcgcgtggtaatgatttgtctgctcaagtggaatttgaa
agctttaaccgccagctcagccctgtaaaccgtcacttaggcagcaagttggtcacgtcg
gtacagaaagacgtacaccgcttgatcgaagcgggggacaatcttatcgaagcgaaggtt
gaggaagtacgcaagcaagctcatcaagatatgcagcatagcttgaatgcagaacttgag
cgtttgcaagcactgaaagcggtaaacccaaatattcgtgacgaagaaattgaagccatt
gatgcacaaattaaggagctcactggttacatcaaccaagctcaagtgcagctcgactcg
ctacgtttgattgtggtgagccacaactaa
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