Vibrio sp. STUT-A16: VspSTUT16_03540
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Entry
VspSTUT16_03540 CDS
T10420
Name
(GenBank) nucleotide-binding protein
KO
K06958
RNase adapter protein RapZ
Organism
vis Vibrio sp. STUT-A16
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vis03019
]
VspSTUT16_03540
Messenger RNA biogenesis [BR:
vis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VspSTUT16_03540
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GFIT
Motif
Pfam:
RapZ-like_N
PapZ_C
AAA_22
nSTAND_NTPase5
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BDR17008
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Position
1:complement(450773..451636)
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AA seq
287 aa
AA seq
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MRLIVVSGHSGAGKSIALRVLEDLGYYCVDNLPVNLLDAFVHSVADSKQNVAVSIDIRNI
PKKLKELTGTLEQLKTELDVTVLFLDANKETLLKRYSETRRIHPLSLGGTSLSLDQAIER
EKEILTPLKAHADLVLNSSGQSLHELSETVRMRVEGRDRKGLVMVFESFGFKYGLPSDAD
YVFDVRFLPNPHWEPALRPLTGLDAPIAAFLEQHQSVLSLKYQIENFIENWLPLLEKNNR
SYLTVAIGCTGGKHRSVYLTQQIGEYFANKGHQVQIRHTSLEKNTKE
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgcgactaatcgtggttagcgggcactcaggtgccggtaagagtattgcgctgcgcgta
ctggaagacttaggttattactgtgttgataacctcccagtgaatttgctggacgcattt
gttcactctgttgctgacagcaagcagaatgttgcggtaagcattgatattcgcaatatc
cctaaaaagctaaaagaactgactggtacactggagcagttgaaaacagagcttgatgtg
accgtgcttttcttggacgccaataaggaaacgctactcaaacgctacagcgaaacacgc
cgaatccaccctttatctttaggtggcacctctctctcccttgaccaagccatcgagcgt
gagaaagaaattttaacgccacttaaagcgcatgccgatcttgtactgaacagcagtgga
caatctttgcatgagttgagtgaaaccgtgcgtatgcgtgttgaaggcagggatcgcaaa
gggcttgttatggtatttgagtcttttggcttcaaatatggcctgccttccgatgccgat
tacgtattcgacgttcgcttcttgcccaacccacattgggaaccagcgttgcgccctctt
acgggtttggatgcccctatcgccgcatttttggagcagcaccaatcggtgttaagtttg
aaataccaaattgaaaactttatagagaattggttacctctgctcgagaaaaacaaccgc
agctatttgaccgttgcaataggttgtaccggtggtaaacaccgttcggtgtacttaact
cagcaaatcggtgagtacttcgccaataaaggacaccaagtgcaaattcgccatacctca
ctagagaaaaacactaaggagtag
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