Vibrio sp. STUT-A16: VspSTUT16_05240
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Entry
VspSTUT16_05240 CDS
T10420
Symbol
pcnB
Name
(GenBank) poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VspSTUT16_05240 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vis03019
]
VspSTUT16_05240 (pcnB)
Enzymes [BR:
vis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
VspSTUT16_05240 (pcnB)
Messenger RNA biogenesis [BR:
vis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VspSTUT16_05240 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
BDR17178
LinkDB
All DBs
Position
1:complement(634772..636139)
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AA seq
455 aa
AA seq
DB search
MHMNTNDYTPSEPATIPELALNVITREEHNISRKQISDNALKVLYRLNGAGFDAFLVGGG
VRDLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQ
EQKNKSISQQSKEGMLLRDNVYGTIDEDAERRDFTINSMYYNIADYSIHDYARGIEDLED
RLIRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARLFEE
SLKLLQSGHGLETYHLLREYNLFQQLFPTIAAHFTEDYSSHTEQMLDLVLDSTDMRIEDG
KRINPAFMFAAMLWYPLCAKADELMEERNLGHYDAIMEASNIILDEQVRTIAIPRRHTAT
IREIWQLQLRLPRRNGKRAFRLMELNKFRAGFDFLEMRGEIEGGDTQKLAKWWETFQNAG
REMRQAMAADLDGQSPKSGQRRRKTYRKKKSKPKS
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcacatgaatacaaacgactatacaccaagcgaacctgccactattccagagctcgct
ctcaatgtaataactcgtgaagagcacaacatttcgcgtaagcagatcagtgataatgca
ctgaaggtactgtaccgcctaaatggtgctggtttcgatgcttttcttgtgggtggcggg
gttcgagacttactgcttggacagaaaccaaaagattttgacattgcgaccaacgcaacg
ccggaacagatcaaacagctatttcgtaactgccgtttgattggtcgccgcttccgcttg
gctcatattatgtttggccgagatatcattgaagtagcgacattccgcggtcaccaccaa
gagcaaaagaataagagcatctctcagcaatcgaaagaaggaatgctgctgcgtgacaat
gtctacggcaccatcgatgaagatgctgagcgccgtgatttcacgattaactcgatgtac
tacaacatcgcagactactcgattcacgactacgcacgtggtattgaagatttagaagat
cgcctaattcgactgattggcgatccagaaacacgctaccgtgaagatccagtacgtatg
ttgcgtgcggttcgcttcgcggtaaagctggactttgatattgaagaagacaccgcggca
ccaatcgaacacatggcaccgttgctcggtgacattccgtcagcgcgtctttttgaagag
tcactcaagttattgcaatccggtcatggcttagaaacctaccacctactgcgtgagtac
aacttattccaacagctcttcccgacgattgcagcgcactttacagaagattactcctct
cacactgagcaaatgttggatcttgtcctagattctaccgacatgcgcatcgaagatggg
aaacgcatcaatccagcatttatgtttgctgcaatgctgtggtacccactgtgtgcgaaa
gccgatgagctgatggaagagcgcaacctaggccattacgacgctattatggaagcgagt
aacatcattcttgatgaacaagttcgtacaattgccattccaagacgccacaccgcaacc
attcgcgagatttggcagttacagcttcgtcttccacgacgcaacggtaaacgtgcattc
cgcctgatggagctcaataaatttagagctggctttgattttcttgaaatgcgcggtgaa
attgaaggtggtgacactcagaagcttgccaagtggtgggaaacttttcaaaatgcaggc
cgagaaatgcgtcaagcaatggctgccgacctagacggtcaatcaccgaagagtggtcag
cgccgccgtaaaacctatcgcaagaaaaagagtaagcctaagtcatga
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