Vibrio sp. STUT-A16: VspSTUT16_06100
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Entry
VspSTUT16_06100 CDS
T10420
Name
(GenBank) bifunctional diguanylate cyclase/phosphodiesterase
KO
K20965
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VspSTUT16_06100
Enzymes [BR:
vis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VspSTUT16_06100
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_8
PAS_4
PAS
Motif
Other DBs
NCBI-ProteinID:
BDR17264
LinkDB
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Position
1:complement(743433..745379)
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AA seq
648 aa
AA seq
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MVSDRYCDIAGLSHEEIIGLNDCQVLGEQFYKKLAPYYQRAFKGTHVEAEITLDETDLET
SLHFSLSPVFEGNEIRFVVFHAVDTSEKQILVRSLEESESKFAKLTQLLPDGLLLIEDDI
IISANPASARLLGLNSPHELLGEELSRLFIDENSKKVFSHRLSTLISDKPFVCLTSARCG
FERKVQLHADSTAILGSESQIILIQDADDTPKNLSSASNEDIHIDSLTKLYNRFGFTKRL
EQLIKKQTPLLVFYLDIDNFKNINDSLGHHIGDKVIQEVSARLKRLLPNQAIIGHLGGDE
FGVILPEPENTRMAEILSDRIISLINQPFDLHHFSKRLACSIGSVRYPEDGQDARILLQN
ADTAMYEAKDRGRNRLIKFNDQMNKEARMRLWLEIELQKALQQNGLEVWYQPKVNARDFS
INGAEALVRWKHPVEGYISPGSFIPVAERAGLIEHLGRVVMRDVFNTVKRWKQQGILPGR
VAINLSPEQFGNPQLIDFMEKLLRTTELDPSCITFELTESAVMSDSEHTLQMLNAIKKLG
FALSIDDFGTGYSSLSYLARFPIDELKIDRAFINDIDTLPKQVTVIENIINLGKSLDLTV
VAEGVETHQQATLLSNLQCNAIQGFHFYRPQPKHEIEELFVQNRRHKN
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggtaagtgaccgttactgcgatatcgcaggtttaagtcatgaggaaatcatcggctta
aacgattgccaggtactgggtgagcagttttataaaaagctggccccttactatcagcgt
gcattcaaaggaacgcatgtcgaagccgaaatcaccctcgatgaaaccgaccttgaaacc
agcctgcactttagtctgtcaccggtttttgaaggtaacgaaattcgctttgtcgttttt
cacgccgtggatacttcagaaaagcagatcctcgtacgctccttagaggagtccgaaagt
aagtttgcgaaattaacacaactactgcctgacggtctgctgcttatcgaagatgacatt
atcatttctgccaaccctgcatcagcacgcctcctgggactgaactctccccatgaattg
ctaggcgaggagctcagccgtttattcatcgatgaaaacagcaagaaagtgtttagtcat
cgtttgagtacattaatttctgacaagccttttgtttgcttaaccagcgcgagatgtggc
tttgaacgaaaagttcagttacacgctgattccacggcgatattaggcagcgagtctcaa
atcatcctgatccaagacgctgacgatacacccaagaatttgtcttctgcatcgaatgaa
gacatacatattgattcgctcaccaaactctacaaccgctttggcttcaccaaacgtttg
gaacagctgatcaaaaagcaaacgccgcttctggtgttctatttggatatcgataacttc
aaaaacattaatgactcacttggtcaccacattggcgataaagtgattcaagaggtatcg
gcccgtcttaaacgattactgccaaatcaagcgattattggtcatttgggtggcgatgag
tttggcgtcattctgccagaaccagaaaatacccgcatggctgaaattttgtcagatcgc
attatctcgttgatcaaccagcctttcgacttgcaccacttcagtaaacgccttgcgtgc
tcaattggtagcgttcgttaccctgaagacgggcaagatgcgcgaatcctgctacaaaat
gccgatactgcgatgtatgaggccaaagatcgtggccgaaatcgcctgatcaaatttaac
gaccagatgaacaaagaagcgcgcatgcgtttgtggcttgaaatcgaactgcaaaaagca
ttgcagcagaacggtttagaagtgtggtatcaaccaaaggttaacgcgcgtgacttcagc
attaacggtgccgaagcgctcgttcgttggaaacaccctgtcgaaggttacattagccca
ggttcattcattcctgtcgccgagcgtgcagggttaatcgaacaccttggacgcgtcgtg
atgcgtgatgttttcaatacggtaaaacgttggaaacaacaaggcatactgccaggtcgt
gtcgctatcaacctctctcccgagcaatttggtaatccacagctgatcgactttatggaa
aagttgcttcgcactaccgagcttgatccaagctgtattaccttcgagctaaccgaaagt
gccgtgatgagtgatagcgaacatacactgcaaatgctgaatgcgattaagaaactgggc
ttcgccctctctatcgatgactttggtaccggttactcttccctttcctacttagcgcgc
ttccctatcgacgagctgaaaatcgaccgtgcgtttattaacgatatcgacacgctaccc
aaacaggtcactgtgattgaaaacatcattaatctgggtaagtcactcgacttgacggtc
gttgccgagggggtggaaacccaccagcaagctactttgctctctaaccttcaatgtaat
gcgattcaaggattccatttttatcgcccacagccaaaacatgaaattgaagagctgttt
gtccagaatcgtcgtcacaagaactaa
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