Vibrio sp. STUT-A16: VspSTUT16_06820
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Entry
VspSTUT16_06820 CDS
T10420
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
VspSTUT16_06820 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vis03400
]
VspSTUT16_06820 (recD)
Enzymes [BR:
vis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
VspSTUT16_06820 (recD)
DNA repair and recombination proteins [BR:
vis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VspSTUT16_06820 (recD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
NAT10_TcmA_helicase
AAA_11
Viral_helicase1
SLFN-g3_helicase
UvrD-helicase
AAA_22
AAA_16
nSTAND3
UvrD_C
DEAD
CbiA
AAA_28
MukB
ResIII
TrwB_AAD_bind
NTPase_1
YrbL-PhoP_reg
DUF87
T2SSE
AAA_7
SRP54
RNA_helicase
AAA
Motif
Other DBs
NCBI-ProteinID:
BDR17336
LinkDB
All DBs
Position
1:828781..830928
Genome browser
AA seq
715 aa
AA seq
DB search
MTTNHNLHSDQDSLLVVLERLAHKGAIRQLDYQFACFIDSQTHDEQSDSQALAFIAGVVS
SELGKGHICLSLFDAQGQSTDLASKLGLFGESALALNTQLQGIDWIEVLQNSSVVGAQGE
ALPLMFDGERLYLHRYWHYEVTLAEKLYQLGATVNLQPQEFARLSDLLNHLFARQYHFLF
NALGKAVEAGSSNQVLRQQLVCDHLDVVASESLDWHAIDSVLSNARKVQDLQILDELVPL
SACVNWQKVAAAVALTRRFAVISGGPGTGKTTTVTKLLAALIEQATHEKNLTIKLVAPTG
KAAARLTESIGKAVQELPVSLELKAKIPTESSTLHRLLGAIPNSAEFRHNKQNPLHLDIL
VIDEASMVDLPMMYKVVDALPKHARLILLGDKDQLASVEAGAVLGDICSFHALGYGKEQA
SAIAKLTGFDTLAHTGNSASSIADSLCMLQKSYRFDARSGIGQLAKAVNSGSAASVDNVW
AKDFSDIEHFALSSQHYNQMMQTLVQEYGRYLKRIGQQETDPKTGESESLTHKAKAVLDT
FNQCRLLCAIREGDFGVAGLNQRIEKALAARKLIQVQDEIWYHGRPVMVTRNDHGLGLYN
GDIGICMLDDSEEEPRLKVFFELPDRSVKSVLPSRVPEHETAYAMTIHKSQGSEFDYTLM
ILPPDFSPILTRELIYTGITRAKKRLALYAELNVLKRGIKVKTARASGLVQRLTN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaaatcacaatcttcattctgaccaagatagcctattggtagtgctagaacgc
ttggcgcacaaaggtgctattcgtcagctcgactatcaatttgcctgttttattgattct
caaacgcatgatgaacagtcggatagccaagcactggcgtttatcgctggtgttgtcagt
agtgagcttggcaaaggacatatctgtctgtctctgttcgatgcacaagggcaatctacg
gatttagccagtaagctagggctgtttggtgagtcggcattggcgctcaacacacagttg
caaggcatagactggattgaagtattacaaaattccagcgtggttggcgcgcaaggagaa
gccttgccgctgatgttcgatggtgagcgtctgtatctgcatcgctattggcattatgaa
gtgacactggcggaaaagctctatcagttgggcgccacagttaacttgcaaccacaagag
tttgcgcgattatcggacttgctcaaccatctgtttgcacgccaataccattttttgttt
aacgcgttaggcaaagcagtagaagcgggaagcagcaaccaagtgttgcgtcagcaattg
gtgtgtgaccaccttgatgtggtcgcaagcgaatcgttggattggcacgccattgattcc
gtgcttagcaatgcgcgcaaggttcaagatttgcaaatactggatgaactcgtaccactc
tcggcttgcgtgaactggcagaaagtcgcggcggcagttgcgttaacccgtcgatttgct
gtgatttctggtggcccaggcacgggtaaaacgacgacagtaaccaaattgcttgccgct
ttgattgaacaggcgacgcacgagaaaaatctaaccatcaagctggtggccccgacgggg
aaagcggcggcgcgattaaccgagtccattggtaaagctgtgcaagagctgccagtttct
ctggagctaaaagccaaaattccgactgaatcaagcaccttacatcggttgctgggcgcg
attcctaatagcgcagaattccgtcacaacaagcaaaatccacttcatttggatatttta
gttatcgacgaagcgtcgatggtcgatttgccaatgatgtacaaagtggtcgatgcctta
ccgaaacatgcgcggctgattttgctaggtgataaagaccaacttgcttcagttgaagct
ggggctgtgttgggtgatatctgttcgttccatgcattgggctatggcaaagagcaggca
tcagccatcgcaaaactgacgggtttcgatactttagcgcatacgggtaacagtgcatct
agcattgccgatagtttatgtatgctgcaaaagagctaccgatttgatgctcgctcaggc
attggtcagttggcaaaagcggttaactcaggttctgctgcgagcgtagataatgtctgg
gcgaaagatttttctgacatcgaacatttcgcgctaagtagccaacattacaaccaaatg
atgcagacgttggtgcaggaatacggtcgttacctcaaacgcattggacaacaggaaacc
gatcctaaaaccggagagtcagagtcgctaacgcacaaagccaaagcggtgttagatacc
ttcaaccaatgccgactgctgtgcgcgatccgtgaaggtgactttggtgttgctgggcta
aaccagcgcatcgagaaagcgctcgcggctcgcaagttaattcaggttcaggatgaaatt
tggtatcacggcagacctgtcatggttacgcgtaatgatcatggtctaggtttgtataac
ggtgatatcggtatttgcatgctcgatgacagtgaagaagaaccgcgtttgaaagtcttt
ttcgagttacctgaccgcagtgtgaaatcggtcttgccaagccgagtgcctgaacatgaa
acggcttacgccatgaccatccataaatcgcaaggcagtgaatttgattacaccctgatg
attttgccaccagactttagcccgatattaactcgtgagttgatttacacaggcattacc
cgcgcgaaaaagcgtttagctctttacgccgaactcaacgttctgaagcgaggcattaag
gtgaaaacggctcgcgcgagtggattagtacagcggcttacgaattaa
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integrated database retrieval system
