Vibrio sp. STUT-A16: VspSTUT16_07590
Help
Entry
VspSTUT16_07590 CDS
T10420
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis03030
DNA replication
vis03430
Mismatch repair
vis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VspSTUT16_07590
03430 Mismatch repair
VspSTUT16_07590
03440 Homologous recombination
VspSTUT16_07590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vis03032
]
VspSTUT16_07590
03400 DNA repair and recombination proteins [BR:
vis03400
]
VspSTUT16_07590
Enzymes [BR:
vis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VspSTUT16_07590
DNA replication proteins [BR:
vis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VspSTUT16_07590
DNA repair and recombination proteins [BR:
vis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VspSTUT16_07590
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BDR17413
LinkDB
All DBs
Position
1:904169..907648
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMVDGLNKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGS
GVKPIIGADFKMQSDEFGEELTQVTLLAADNVGYKNLTLLISKAYLRGHVQHHPVIDKAW
LAEMSEGLIVLSGGKSGEIGRGLLKGNRQIVQGCVDFYKQHFPDRFYLELLRTGRPDEET
YLHFAVELAEQQDLPVVATNEVVFLSPDLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMKETEFLVMKSREGL
EERLEFLFPDEEERKRRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLIPPDPGMTLDKAFKAEPA
LPELYEADEEVKELIDMCHILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKEPVQIESIPLEDPASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKETLDPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRAIFEEGAIKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFKDLFDFCARVDLKRVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQHHQAEAFGQTDMFGVLTDAPEEVEHKYTQVPPWPEKVWLEGERDTLGLY
LTGHPINAYVKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDANQINDQFFEQFSRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LLDDLKQLLGKSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcccaaattcatccacctgcgtgttcatagtgacttctcgatggtggatggc
ctcaacaaagttccgccaatcgtaaagaaagttgctgagctcggtatgcccgcaatggcg
ttgaccgactttaccaacctatgtggtttggtgaagttttacggtacggcgcatggcagt
ggtgttaaaccgatcattggtgctgactttaaaatgcagtcggacgagtttggtgaagag
ctgacacaagtgactttgcttgcggcggataatgtaggttataagaacctgacgttattg
atatcaaaagcgtacttacgtggacatgttcaacaccacccggtgattgataaagcctgg
ttggctgaaatgtctgaaggcctgattgtattatccggcggtaaaagcggggaaattggt
cgcggccttttgaaaggcaaccgtcaaatagtgcaagggtgtgttgatttttataaacag
cattttccagatcgcttttatcttgagttacttcgtaccggtcgtccagatgaagagact
tatcttcactttgcagttgaattggcagagcagcaagacttgccagtagtggcgaccaat
gaagttgtattcctgagtccagacctatttgatgctcatgaaatacgcgtagcgattcac
gatggttacacattagaagatccgcgtaggccaaaaaactacagtccgcagcaatatctt
cgtacagaagaagaaatgtgcgagctgtttgctgatattcctgaagcgttagaaaacagt
gtcgagatagcgaagcgttgtaacgtgactgtgcgcttaggggagtacttcctaccagcc
ttcccaactgaagggatgaaagagactgagttcttagtcatgaaatcccgagagggcttg
gaagagcgtttagagttcctatttccagatgaggaagagaggaaacgtcgtcgccctgaa
tatgatgaacgtcttcagatagagctagatgttatcaaccaaatgggattccctggttac
ttcttgatcgtaatggagttcatccagtggtcaaaagataatggaattcctgtaggtcct
ggacgtggttccggtgccggctctttggtggcttacgcattaaaaatcaccgacctggat
ccattagaatacgacttgctgttcgaacgtttcttgaacccagaacgtgtctcgatgccc
gatttcgacgtcgatttctgtatggataaacgtgaccaggttattgaccacgttgcggaa
atgtacggtcgcgacgcggtgtctcagatcatcacgtttggtaccatggcggcaaaagcg
gtaatccgtgacgttggccgcgtattgggtcatccatttggttttgttgatcgtatttca
aagctgatcccgcctgatccaggcatgacgctagataaggcgtttaaagctgaacctgcg
ctacctgaattgtatgaggccgatgaggaagttaaagaactcatcgacatgtgtcatatt
ttggaaggttgtacgcgaaacgccggtaaacacgctggtggcgttgtaatttcacctaca
acaattaccgattttgcaccaatttatgcagacgctgaaggtcactttccggttactcaa
tttgataaaaacgatgttgagaccgctggcctagttaagtttgacttcttgggtttacgt
accttaaccattattgactgggcgttagggctgattaacccacgtctagagcgagaaggt
aaggagccggttcaaattgaatccataccgttagaagatcctgcctctttccgtttgttg
caaaactctgaaacgacagcggtattccagcttgaatctcgaggcatgaaagagctgatc
aaacgacttcagccagactgtttcgaagacattatcgcattggtagcactcttccgtccg
ggtcctttgcaatcgggcatggtagataactttatcgaccgtaaacatggtcgagaagcg
atctcttatccagatgaaaagtggcaacacgagtcgctaaaagagacgcttgatccaacc
tacggcatcatcctgtaccaagagcaggtaatgcagattgcgcagatcttagcgggttac
acgctaggtggtgcggacatgctccgccgtgcaatgggtaagaaaaagccagaagagatg
gcaaaacaacgtgctatctttgaagaaggtgcgataaagaacggtatcgatggcgagttg
gcgatgaaaatcttcgacttggtagagaagttcgctggttatggttttaacaaatcgcac
tctgctgcttatgcattggtttcttatcagactctttggctgaaaacccattatcctgcc
gaatttatggccgcggtaatgacagctgatatggataacacggaaaaagtcgttggcttg
gtcgatgagtgtttccgtatgaagctcaccgtgttgccaccagacatcaactctggccta
tatcgctttaatgttgatgaaaatggcgcaattgtttacggtattggtgcgataaaaggg
gtaggtgaaggtcctatcgatgcgattcttgaggcgagaaataaaggtggtcactttaaa
gacctatttgatttctgtgctcgagttgatctaaaacgcgtcaataaacgagtgatagag
aagctgatttacgcgggcgcgttggatcgactaggcccacaccgcgcggcgatgatggcg
tcactcaatgatgcggtaaaagcagcaagtcaacatcatcaagctgaggcgtttggtcaa
acggatatgtttggtgtgctaacggatgcgcctgaagaagtagagcataagtatacgcag
gttccgccttggccagaaaaagtgtggttagagggcgagcgtgataccctaggtctatat
ttgacagggcacccaattaacgcctacgtaaaggaactaaacaaatacaccagttgtcga
ctaaaagacgcaacacctacgcgtcgcgaccaatctgtcacggtggctggcctggttatt
gccgctcgtgtaatgacgaccaagcgtggcacacgaattggtattatgacactggatgac
cgaagtggtcgtatggaagtgatgttgttctcagatgcactggatcgatacgctgaactt
ctcgaaaaagacagaattttggtcgtttctggacaggtcagctttgatgacttcaacggt
ggccttaaaatgtcggcgcgtgaagttatggatctcggcagtgcgcgcgagaaatacgct
cgtggtttgtcggtatcgatagatgcaaatcagatcaacgatcagttttttgagcagttc
agccgtattttagaaccgcacaaagccggaaccgtacccgtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcaccgagtggcgagtaacgccaagtgataca
ttactcgacgatttaaaacagttacttggcaaaagccaggtagaactcgaatttaactaa
DBGET
integrated database retrieval system
