Vibrio sp. STUT-A16: VspSTUT16_17390
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Entry
VspSTUT16_17390 CDS
T10420
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vis Vibrio sp. STUT-A16
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vis03000
]
VspSTUT16_17390
Transcription factors [BR:
vis03000
]
Prokaryotic type
Helix-turn-helix
Other families
VspSTUT16_17390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
GAF
HTH_8
AAA_5
AAA_2
Mg_chelatase
HTH_30
AAA
PAS_4
AAA_3
nSTAND6
MCM
PAS_9
PAS_GdpP
HTH_7
HTH_50
HTH_29
HTH_23
HTH_22
HTH_11
RsgA_GTPase
Diguanyl_cycl_sensor
HTH_Tnp_IS1
AAA_16
HTH_17
DUF2089
Motif
Other DBs
NCBI-ProteinID:
BDR18393
LinkDB
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Position
1:1970171..1971931
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AA seq
586 aa
AA seq
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MELQHISDNNWLSTSWIRSEQAGLKQRRRPEDIRVTPATLQDRRHQLNFLLETVTQFALP
LFNQLFAHSDSRLILTDADGVIIGSWGQPKFREKLTEIALSSGACWQEKVKGTNAIGTAI
VEAKPVSVIGDQHFIQHHRFISCSANPIFDHLGHLIGVLDITSEQKKHDFSTQVLVQNMV
QQVENQLLNLIPQGHIRVDLACEKGLLNSGWQGIIIANEDGQILAHNQVASQLLAQQNVI
GQSLDDILSIQSGEHPFVFKTKPLTDKKVKSRSVTASNDLHYGDSTVEHCWQQANRVIDK
DISLLILGETGVGKNEFVKALHKNSQRKTGPLVSVNCGALPKDLVESELFGYVAGAFTGA
NSKGYQGKIRQAHKGILFLDEIADLPLEAQSRLLHVLQDKTVLPVGSNQSVQVDTQIIAA
THKDLENLVSEGLFRQDLYYRLNGLIIELPRFEERDDKQQLIENIHRRHAESEQQLCPHL
LSLLLSYSWPGNLRELDSLIKVSALMAQGEETLELTHVPTHLSKKLSQAQDVTTTAEPTL
ELRATVEDKLLKTYQANQGNISKTSRMLGVSRNTIYRKLKSLGILG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaacttcaacacattagcgataacaattggctttcaacttcatggatccgaagtgaa
caggcgggtttaaaacagcgtcgacgccctgaagatattcgagtgacacctgcgacactt
caagataggcgtcaccaactcaacttcttattggaaaccgtcacccagtttgctctcccg
ctgtttaatcagctttttgctcatagtgacagccgcttaattctgacggatgccgacggc
gtcatcatcggcagttggggacaacctaagttccgcgagaagttgaccgaaattgcgcta
agctctggtgcgtgctggcaagaaaaggtcaaaggcactaacgcgattgggactgcgata
gttgaagcaaaaccggtatcagtcattggcgatcagcacttcatccaacaccatcgtttt
attagctgctcggccaatcctattttcgatcatcttggtcatttgattggcgtgctagat
atcaccagcgaacaaaagaaacatgacttctcaacgcaagtgctggtacaaaacatggtc
cagcaagttgaaaatcaattgcttaacttgattccacaagggcatattcgtgtggatttg
gcatgtgagaaaggcttactgaacagtgggtggcaagggattatcatcgccaatgaagat
ggacagattcttgcgcacaatcaagttgcttcgcagctcctcgcgcaacaaaacgtcatc
gggcaatcgctcgacgacattctttctatccaaagtggcgagcaccctttcgtgttcaaa
acaaagccgctgaccgacaaaaaagtgaagtctcgttccgttaccgcttccaatgatctg
cattatggtgattccactgtcgagcattgctggcaacaagccaatcgcgttatcgataaa
gacatcagtttactgattctcggagagactggagttggtaaaaatgagtttgtgaaagcg
ctacataaaaacagccagagaaaaacggggccgttggtttccgttaactgcggcgcacta
ccaaaagatttggttgagtccgaattgtttggctacgtggctggtgcatttactggcgca
aacagcaaaggctatcagggaaaaattcgccaagcgcacaaggggattttgtttctggat
gaaatcgcagatttacccttggaagctcaaagccgcttgctgcatgtattgcaagataaa
accgtgcttcccgttggttcaaaccaaagtgttcaagtagatacgcaaatcatcgcggcc
acgcataaagatctcgagaacttggttagcgaaggattgttccgtcaagacttatactat
cgcctcaatggtttgatcatcgaattgcctcgcttcgaagagcgagatgataagcaacaa
ctgatcgagaatattcatcgacgtcacgctgaatctgaacaacaactttgccctcaccta
ctttctctgctgctttcttactcttggccaggaaacttgcgtgaactcgatagtttaatc
aaagtatccgcattaatggcgcaaggtgaagaaacgttagagctcactcacgtaccgact
cacctgagtaagaaactcagccaggctcaagacgtaacaaccactgccgaacccacgtta
gaactgcgtgcaaccgtcgaagacaaactgctcaaaacatatcaagccaatcaggggaac
atcagcaaaacatctcgtatgcttggcgtcagtcgaaatacgatatatagaaagctgaaa
agcctcggcatattgggttaa
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