Vibrio sp. STUT-A16: VspSTUT16_19320
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Entry
VspSTUT16_19320 CDS
T10420
Name
(GenBank) carboxylate--amine ligase
KO
K19789
DNA repair protein RadD
Organism
vis Vibrio sp. STUT-A16
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vis03400
]
VspSTUT16_19320
DNA repair and recombination proteins [BR:
vis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
VspSTUT16_19320
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GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
SLFN-g3_helicase
AAA_22
DZR
DUF7577
zf-tcix
ERCC3_RAD25_C
FAD_binding_4
AAA_30
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
BDR18586
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Position
1:2195606..2197357
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AA seq
583 aa
AA seq
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MYTLRPYQADSVKAVIHYFRKHSTPAVIVLPTGAGKSLVIAELARLAKGRVLVLAHVKEL
VEQNHAKYEGYGLKGSIFSAGLGRKETDQQVVFASVQSVVRNLDSFKNQFSLLVIDECHR
VPDDKNSSYQKVITHLRELNPGIKVLGLTATPYRLGMGWIYQYHTRGQVRTEEPRFFRDC
IFELPIRYLLDENFLTPARMMDAPVLSYDFSQLKPANTGRYKEAEMDMVIDKAKRATPQI
VEQIMQYARERQGVMIFAATVRHAQEIHSLLPEGETEIVIGDTPTPERDAIIQAFKNRQI
KYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLSDGKSECLVLDYAGNSY
DLYQPEVGDPKPDSDSEIITIPCPACGFNNNFWGKLDSNGFLVEHFGRRCQGYFEDEDTG
EREHCGYRFRAKYCGECGADNDIAARICHECDATLVDPDKKLKEALNLKDALIFECTEMD
LSVFKSSDGKSQLKVTYSGEPYQGEGIALVHEFWSLSTKKQKQTFKDQFVRPHLADKHRP
FEEASPTRVVANQHRFRLPQFVIARKSGRFWKLRDKIFEDELK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtacacacttcgcccttatcaagccgactcggttaaagcagtcattcactactttcgt
aaacactcgacaccagcagtgatcgtactgcctactggtgccggaaaaagcttggtgatc
gcagagcttgctcgccttgcgaaagggagagtgttagtcctcgctcacgttaaagagctg
gtcgagcaaaaccacgcgaagtatgaaggttatggtttaaaaggttccatcttctcagca
ggattggggcgaaaagaaactgaccagcaagtcgtgtttgcttcggttcaatcggtcgta
cgtaacttagattcgttcaaaaaccagttttctctgctcgttattgatgagtgccatcgt
gtgccggatgacaaaaacagcagctaccaaaaagttattactcacttacgagaactgaac
ccaggcattaaggttctgggactaactgcaacgccctatcgtttaggaatgggctggatt
tatcagtatcacacccgaggtcaagtacgcaccgaagagcctcgattcttccgcgattgt
attttcgaactgccgatccgttacttgctcgacgaaaacttcctcactccggcccgcatg
atggacgcgcccgttttgtcttacgacttctcgcaactgaaacccgcaaacaccggacgc
tacaaagaagcagaaatggacatggtgatcgataaagccaaacgcgccactccgcaaatt
gttgagcaaatcatgcaatatgcgagagaacgtcaaggtgtcatgatcttcgccgcgact
gtccgacacgcacaagagatccacagtttactgccagaaggcgaaactgaaatcgttatt
ggtgatacacctacgccggagcgcgatgcgatcatccaagcgttcaagaatcgtcaaata
aaatatttggtcaatgtttcggtactgactaccgggtttgatgcgccgcatgtcgattta
atcgcgattttgcgaccaacagagtcagtcagtctataccagcagattgtagggcgagga
ttacgcttatcagacggaaaatcagaatgtttagtgcttgattacgcaggcaacagctac
gatttataccaacctgaagtcggtgatcccaaaccagactctgacagtgaaattatcacg
attccctgcccggcttgcggattcaataacaacttctggggtaaattggatagtaacggt
ttcttggttgaacactttggcagacgttgccaaggttactttgaagatgaagacacaggc
gaacgtgaacactgtggataccgttttcgtgccaaatactgtggtgaatgtggtgccgac
aacgatatcgctgcgcgcatttgtcatgagtgtgacgcaacgcttgttgatccagataaa
aaattaaaagaagcccttaatctgaaagatgcattgatatttgaatgcacagaaatggac
ctgtcagtattcaagtccagtgatggtaaatctcaactcaaggtgacatattctggcgaa
ccataccaaggcgaaggcattgcgttagttcatgagttttggtcattgagtaccaaaaaa
caaaaacaaacgtttaaagaccaatttgtgcgccctcacttggcagacaagcatcgccct
tttgaagaggcttcaccgacacgtgttgttgccaatcaacatcgtttccgtttgcctcag
tttgttattgcaaggaaatccggtcgcttttggaaattgcgagacaaaatttttgaagac
gagttgaaataa
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