Vibrio sp. STUT-A16: VspSTUT16_20010
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Entry
VspSTUT16_20010 CDS
T10420
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K18219
sigma-54 dependent transcriptional regulator, tetracycline resistant transcriptional regulator
Organism
vis Vibrio sp. STUT-A16
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vis03000
]
VspSTUT16_20010
Transcription factors [BR:
vis03000
]
Prokaryotic type
Helix-turn-helix
Other families
VspSTUT16_20010
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
HTH_28
HTH_23
Mg_chelatase
AAA
AAA_5
HTH_29
HTH_17
MCM
AAA_2
HTH_22
AAA_16
HTH_50
HTH_Tnp_ISL3
HTH_7
HTH_1
HTH_Tnp_1_2
HTH_30
Mga
AAA_3
HTH_IclR
AAA_7
RWP-RK
HTH_11
AAA_22
HTH_Tnp_1
MarR_2
HTH_psq
AbiEi_4
NUMOD1
HTH_3
CENP-B_N
Motif
Other DBs
NCBI-ProteinID:
BDR18655
LinkDB
All DBs
Position
1:2266358..2267311
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AA seq
317 aa
AA seq
DB search
MKLRNGSNKQAVDFSDTTLYPLIGNSACIQELRTAIQKYAQCDAEVLIQGETGVGKGLCA
RLIHQLSNRHSAPFVEVNCGAIPSGLIASELFGHEKGAFTGAISDRIGFIQKAHKGTLFL
DEIGDMPPDLQIHLLHFLESKQIHKVGADKFIDVDCRVIAASHVDLKNEVVQGGFREDLF
YRLNILPLTIPPLRKRGKDILMLSEHFLTDLSHGQVQKMSDKVKAKLLKHRWPGNVRELR
NVIQRAIVMCEDHTLLVADLGLDNNERQLLPSVDQIDLDYLLQAIEENKHNMSAAARHLG
ISRTTLYRLIKKYNLNV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgcgtaacggtagtaacaaacaagctgtggatttcagcgatacaacactatac
ccattaatcggcaatagtgcatgtatccaagaacttcgcacggcaatccaaaagtacgct
caatgtgatgctgaagtactcattcagggtgaaacaggggtgggcaaaggtctctgtgct
cgtcttattcatcagttgtcgaacagacactcggcgccttttgttgaagttaactgcggc
gcaattccaagtggtcttattgcgtcagaacttttcggtcacgaaaaaggagcatttaca
ggagcgatttcagatcgtatcggttttattcaaaaagcgcataaaggtaccctattccta
gatgagattggtgatatgccgccggatctacaaatccaccttctgcactttttagagagt
aagcaaatccataaagtcggcgctgataaattcattgacgtggactgcagagtcattgct
gcgagccacgtggatttgaaaaatgaggttgtacaaggcggattccgtgaagatttattc
tatcggcttaatatcttgccattaactattcctccactgagaaagcgtgggaaagatatc
cttatgttatcagaacacttcttaacagatttgtctcatggtcaggtacaaaaaatgtcg
gataaagtgaaagccaagctcctcaagcatcgttggccaggtaacgtaagagaactgcgg
aatgtaatccaacgagcgattgtcatgtgtgaagatcacacgcttctcgtcgctgacttg
ggccttgataataatgaaaggcaattactcccttcagtggaccaaattgatctcgactac
ctactgcaagctatcgaagaaaataagcacaatatgagtgcggctgcacgtcatcttggt
atttcaagaacaacgctttatcgtctaataaagaaatacaacttaaatgtttag
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