Vibrio sp. STUT-A16: VspSTUT16_25940
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Entry
VspSTUT16_25940 CDS
T10420
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K20919
sigma-54 dependent transcriptional regulator, positive regulator of biofilm formation
Organism
vis Vibrio sp. STUT-A16
Pathway
vis05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VspSTUT16_25940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vis03000
]
VspSTUT16_25940
Transcription factors [BR:
vis03000
]
Prokaryotic type
Helix-turn-helix
Other families
VspSTUT16_25940
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VpsR
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
AAA_16
AAA_5
HTH_29
HTH_7
HTH_22
HTH_50
HTH_17
HTH_Tnp_1_2
AAA
MCM
TIP49
HTH_IclR
HTH_30
DUF134
TrmB
HTH_23
RWP-RK
Motif
Other DBs
NCBI-ProteinID:
BDR19248
LinkDB
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Position
1:complement(2937567..2938901)
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AA seq
444 aa
AA seq
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MAGQFKMDSIPGSLVVVGGTYEPWLSVLEQVGWKCHQVGDLRKANTLLEDIGPCIGIVDL
SHDEFSLNGLANLVSSHKHVRWLAFIRESQLGTDTICQFIVNFCIDFFTAPIPDAQLLST
IGHQLGMLKLEKKVWPSFGSSLDMGLIGESIPMKRLRDQVKRIGPTDVSILISGESGTGK
EAVARAIHKVSSRSHKPFMAINCRALNEQRFQAEVFGINADEDMEACMLEQADGGTVLFN
DILTISKEQQMNLLRFLQEGTIDTKDGVKAVNVRILAANSSDVEKALIDGDFNEELYHYI
NVLRINVPSLKERASDISLLARYYLQEFSKEYNSQAKSFSEDALKALTRYFWPGNVRELM
NQVKRAVLMSDSVMIEEHHLDLPQRNDSKRSLKSIREKSERDALLVVLESHSGQVSNAAK
ELGVSRATMYRLLNKHNLISDQAM
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggctgggcagtttaagatggattccatcccgggatcgcttgtggtagttggcggtact
tatgagccttggttatcagtacttgagcaagtgggctggaagtgtcaccaagtgggtgac
ttacgcaaagctaatacgttgttagaggatattggtccatgtatcggtattgtcgatctc
agccatgacgaattcagcttgaacggtttggcgaacttagtcagttctcacaaacacgtg
cgttggttagcgtttattcgtgaatctcagcttggcaccgacaccatatgccagttcatt
gttaacttttgtatcgactttttcactgcgccaatcccggatgcccaacttttaagcacg
attggtcaccagcttggtatgctcaagttggagaaaaaagtttggcctagttttggtagc
agcttagacatggggctgatcggtgaatctatcccgatgaagcgtttacgcgatcaagta
aagcgaatcggtccgacggacgtcagtattctgatttctggggaaagtggtacaggtaaa
gaagcggttgctcgcgctatccacaaagtctcttcacgctcccataaaccgtttatggca
attaactgtcgcgcgctcaatgagcaacgtttccaggcggaagtatttggtattaacgcc
gatgaagatatggaagcatgcatgctcgaacaagcggatggcggtacggtgttgtttaat
gacattcttaccatctcaaaagagcaacaaatgaatctgctgagattcttgcaagaaggc
accattgataccaaagatggtgtaaaagctgtcaatgtgcgcatccttgcggctaactcg
tcagatgtagaaaaagccttgattgacggagattttaatgaagagctttatcactacatt
aacgtattacgcattaatgtcccgagcttaaaagagcgcgcgagcgatatttctttgtta
gcgcgctactacttacaagagttttctaaagagtataactcgcaagcaaaaagcttttct
gaggatgcactcaaggcactgacacgttatttctggccaggtaacgtacgtgagttgatg
aaccaagtgaaacgagcggttctgatgtctgacagcgtaatgattgaagagcatcaccta
gatttgcctcagcgtaatgactcaaagcgtagtttgaaatcgattcgtgagaagagtgag
cgtgacgcgttactggttgttttggaatctcattctggtcaagtttcgaatgcggcgaag
gagcttggtgtttcacgcgcgacgatgtatcgactactgaacaaacataatttgatttct
gatcaagccatgtga
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