Vibrio sp. STUT-A16: VspSTUT16_27160
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Entry
VspSTUT16_27160 CDS
T10420
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K05880
transcriptional activator for dhaKLM operon
Organism
vis Vibrio sp. STUT-A16
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vis03000
]
VspSTUT16_27160
Transcription factors [BR:
vis03000
]
Prokaryotic type
Other transcription factors
Others
VspSTUT16_27160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_2
PAS
GAF
AAA_5
AAA_16
AAA
PAS_4
PAS_8
nSTAND3
AAA_7
TIP49
AAA_22
ABC_tran
AAA_14
RuvB_N
Bac_DnaA
PAS_7
HTH_50
RsgA_GTPase
ATPase_2
NB-ARC
IstB_IS21
NTPase_1
AAA_29
Motif
Other DBs
NCBI-ProteinID:
BDR19370
LinkDB
All DBs
Position
1:3081260..3083185
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AA seq
641 aa
AA seq
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MLSIEDTKTKWEFFQKHHWVSPEFSRTPVLESWERCIKQCSPYTWSKPHIASGFTFSSLM
KRNEHLLECATTVLEDTYDMLGDEDLLLMVTDGNGCVLSVVGHDSMQQEMQVLGIKQGCF
LSEGKIGTNAVNLCISTHIPCEVFAAEHFNRHLHSYASVAAPVFDQFGKLRGTTCLLKKA
ESYKKENLVIIASSAKEVSLQIHIQSEQENINRLTCAHNATLECMDDGLLAWDEESRITM
VNHQSERLLNIEASQVLDKEVFSVLRFPPNVLNSIESGASINRKLTTVEVRGEFVEAIIT
LRPLNDGTHLLFLHPIDKIRELAQQQIGGSARYTFSTLPVISRKMKHVITVAKRAIKSKS
PILITGEEGVGKATLAMAIHNESTYKEGPFITLNCRSINTEQLVKETLGYDEGQGMPSKF
ELAHGGTLFLEKVEYLSPDLQAVLLKLLKTGLVSRSDSLRLIPVDFQLITSTASEISEYV
TQRSFGRQLYYEISSNELHIPPLRKRKEDIEFLVQQLISHYERRHNVTISIEPVALEALM
NFRWSGNNSELRNRTERILLNRSSNLIKLNDIPEDIKLNSRHTAENTPVITLEEAERRAI
VQAWNQCDGKMHDMAKALQIGRTTLWRKINKFGLQEQMKLY
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgctttcaatcgaagacactaaaaccaaatgggagtttttccagaaacaccactgggta
tctccagaattttcccgcactcccgtacttgagtcgtgggagcgttgcataaagcaatgc
agcccttatacctggtcaaaaccacatattgcctctggctttaccttctcatctctgatg
aaacgcaacgagcacctcctcgaatgcgccactaccgtacttgaagacacttacgacatg
ctaggggacgaagacctgctattgatggtgactgacggcaacggctgcgttctatctgtt
gtgggacatgactcaatgcaacaagagatgcaggtactcggcattaaacaaggctgtttt
ctatctgaaggaaaaattggcacaaatgcggtcaatctttgtattagtactcatatcccg
tgtgaagtattcgcagcagaacatttcaatcgccacttacattcttatgcctctgtagca
gcacctgttttcgaccaatttggcaagttacgcggcacaacatgccttctcaaaaaagca
gagagctacaagaaagaaaacttggtcatcatcgcgtcgagcgcgaaagaagtcagtttg
caaatccatattcagtcggaacaagaaaacattaaccgcctcacttgtgcgcacaacgca
acgttagaatgcatggatgatggccttctggcctgggatgaagaaagccgtatcacgatg
gtaaatcatcaatcagagcgcttgttaaacattgaagccagtcaggtcttggataaagaa
gtcttttctgttttacgcttcccgccaaatgtcctcaatagtattgagtcgggtgcaagc
atcaaccgaaaactcacaacggtagaggttcgtggagagtttgttgaggcaatcattacc
ttgcgtccactcaacgacggcacacacttattgtttttgcaccctatcgataaaattcgc
gaacttgctcaacaacaaataggtggcagtgcgcgctatacgttcagtactttgcctgtt
atttcacgaaaaatgaagcatgtcattaccgtggcaaaacgggccataaagtccaaatca
ccgattctaattacaggtgaagaaggtgtaggaaaagccactctcgccatggcgattcat
aacgaaagcacctacaaagaagggccattcattacgctcaactgtcgctccatcaataca
gagcaactggtcaaagaaaccctaggctacgacgaaggacaaggcatgccttctaagttt
gaactcgcccatggcggtacgctctttttagagaaggtggaatatctgtcgcccgattta
caagccgtgttacttaagttgttaaaaactgggctcgtcagccgcagcgacagtttgcga
ttgatccccgtagactttcaacttattacgagcaccgcttcagagatcagcgagtatgtc
actcagcgctcatttggtcggcaactttattatgaaatctcctcgaacgagctgcatatt
ccgccactacgaaagcgtaaagaagacattgaatttctcgtccagcagcttatcagccat
tatgaacgccgccataatgtgacgatctcgatagagccagtcgcactggaagcgttgatg
aattttcgttggtcaggcaacaactctgaattaagaaaccgaactgagcgaattttgctg
aaccgcagttccaacttaatcaagctgaacgatattcctgaagacattaaactgaattct
cgccataccgcagaaaatacgccagtaatcacgttagaagaagccgagagaagagctatc
gttcaggcttggaatcagtgtgatggcaaaatgcatgatatggcgaaagcattgcaaatt
ggccgcacgaccttatggagaaaaattaataagtttgggctgcaggagcaaatgaagctg
tattaa
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