KEGG   Vibrio sp. STUT-A16: VspSTUT16_29750
Entry
VspSTUT16_29750   CDS       T10420                                 
Name
(GenBank) type II secretion system protein GspD
  KO
K02453  general secretion pathway protein D
Organism
vis  Vibrio sp. STUT-A16
Pathway
vis03070  Bacterial secretion system
vis05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vis00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    VspSTUT16_29750
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VspSTUT16_29750
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vis02044]
    VspSTUT16_29750
Secretion system [BR:vis02044]
 Type II secretion system
  General secretion pathway protein
   VspSTUT16_29750
SSDB
Motif
Pfam: Secretin Secretin_N type_II_gspD_N0 LUD_dom
Other DBs
NCBI-ProteinID: BDR19629
LinkDB
Position
1:complement(3353359..3355377)
AA seq 672 aa
MKHWFSKSAWLLAGSLLCVPGAIANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGK
IDVRSYDVLNEEQYYSFFLNVLEVYGYAVVEMDNGVLKVIKAKDSKTSAIPVLGDGSAQG
DSVITRVVAVRNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIK
RVDQAGDKEIELVELRNASAAEMVRIVEALNKSTNQKSTPEFLEPKIVADERTNAILISG
DPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVDVLKGVSDNLQAEKQVGQKAS
GAQRGEVVIAAHAATNALVLTAPPDIMNALQDVIAQLDIRRAQVLIEALIVEMSEGDGIN
LGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTEYYTNANGERTPYDVTESGDY
STLASALSGVNGAAMSIVMGDWTALVSAVATDSNSNILSSPSITVMDNGEASFIVGEEVP
VITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGANGAVDVR
FAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHLFKSTSTQTEKRNL
MVFIKPTIIRDGMTADGITQRKYNFIRAEQLYKADQGLKLMADEKIPVMPAFGQERQHPT
EIQAFIDQMENN
NT seq 2019 nt   +upstreamnt  +downstreamnt
gtgaaacattggttcagcaaaagtgcttggctactagcaggaagtttactctgcgtccca
ggtgcaatagcaaacgaatttagtgccagctttaaaggcactgatattcaagaattcatc
aacatagtgggtcgtaatctcgaaaagaccatcattgttgacccttcagtgcgcggtaaa
atcgatgtccgcagctatgacgtgcttaacgaagagcaatactacagctttttccttaac
gtactcgaagtatacggctacgccgtcgtagaaatggacaacggtgtacttaaggttatc
aaagcgaaagactcaaaaacgtcagcaatccctgtattaggtgatggcagcgcgcaaggc
gacagcgttatcactcgagttgttgcggtgcgtaatgtgtcggttcgtgagttgtctcct
ctacttcgtcaactgattgataatgctggtgctggtaacgtagttcactacgatcctgcg
aacatcatcttgatcacaggtcgtgcggcggtcgtgaatcgcttagcggaaatcattaag
cgtgttgaccaagcgggtgataaagaaattgagctggtggaactgcgcaatgcttctgct
gccgaaatggtgcgtattgttgaagcactgaataaaagcaccaatcagaagagcacgcct
gagttccttgagcctaaaattgttgccgatgaacgcaccaacgcgattttgatttctggc
gatcctaaagtacgtgcgcgtctgaagcgattgattcgtcaacttgacgttgaaatggcg
accaaaggtaacaaccgcgtggtttatctgaagaacgcgaaagctgaagatttggtggat
gtactaaaaggtgtttccgataacctacaagctgaaaagcaagtcggccagaaagcgtca
ggtgcccagcgtggtgaagtggtgattgctgcgcacgcagcgaccaacgccttagtatta
acggctccaccagatatcatgaatgcgctacaagatgttattgctcagcttgatattcgt
cgtgctcaagtcttgattgaggcgctgatcgttgaaatgtcagaaggtgacggcattaac
ttaggtgttcagtggggctcactggaaaccggtgcggtgattcagtacggtaactctggt
gcaccgattggtcaggtaatggttggtctagaagaagcaaaagatcaaactcgaactgaa
tactacacaaatgcgaatggtgaacgaacgccatatgatgttactgaatctggtgattat
tctactcttgcatcggcactgagcggtgttaacggtgctgcgatgagcatcgtgatgggt
gactggactgccttagtcagtgcggtagcgaccgactccaactcaaacattctatcttct
ccaagtatcacggtaatggataatggtgaagcatcatttattgttggtgaagaagtgcct
gttatcacaggctctacggctggctcaaacaacgacaatccattccaaacggttgatcgt
aaagaagtgggcatcaagcttaaggttgtgccacaaattaacgaaggtgactctgttcag
ttaaatatcgagcaagaagtgtccaatgtattaggtgcaaacggtgcggttgacgttcgc
tttgctaagcgtcagttaaatacctcagtcatgatccaagatggtcagatgctggttctt
ggtggtttggttgatgaacgtgcactcgaaagtgagtcaaaagtaccgctactgggtgac
atcccagtgcttggtcatttgttcaaatcaaccagcacgcaaacagaaaagcgtaacttg
atggtgttcatcaagccgacgattattcgtgatggtatgactgcagacggcattacacag
cgcaaatacaactttattcgcgcagaacagctctacaaagcggatcaaggattgaagttg
atggctgacgagaagatcccagtcatgccagcctttggccaggagcgtcagcacccaact
gagatacaagcgtttattgatcaaatggaaaataactaa

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