Vibrio sp. STUT-A16: VspSTUT16_29990
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Entry
VspSTUT16_29990 CDS
T10420
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis03030
DNA replication
vis03410
Base excision repair
vis03420
Nucleotide excision repair
vis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VspSTUT16_29990
03410 Base excision repair
VspSTUT16_29990
03420 Nucleotide excision repair
VspSTUT16_29990
03440 Homologous recombination
VspSTUT16_29990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vis03032
]
VspSTUT16_29990
03400 DNA repair and recombination proteins [BR:
vis03400
]
VspSTUT16_29990
Enzymes [BR:
vis01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VspSTUT16_29990
DNA replication proteins [BR:
vis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VspSTUT16_29990
DNA repair and recombination proteins [BR:
vis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
VspSTUT16_29990
NER (nucleotide excision repair)
GGR (global genome repair) factors
VspSTUT16_29990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BDR19653
LinkDB
All DBs
Position
1:complement(3383457..3386243)
Genome browser
AA seq
928 aa
AA seq
DB search
MASIPENPLILIDGSSYLYRAFHAYPGTMSNGEIPTNAVYGVVNMLRSMMRQFASERIAV
VFDAKGKTFRDDMYAEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLICVPGVEADDVIGT
LAHQASQKGMPVLISTGDKDMAQLVDDNITLINTMTNVVMDREGVVEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGGLTKLYENLDDIAALGFRGSKTMAKKLIDNK
ENAMLSYELATIKLDVELEETPESLLKAEPNKDELVKLYGQLTFKSWLNELLEGGSGSVE
AVELAGSAQMSSSHAEMETSAVTIDRSQYETILDEETFNAWLDKLQTAELFAFDTETDNL
DYMLANLVGLSFAVDEGIAAYVPVAHDYLDAPEQLDRDWVLGQLKPILEDAAKAKVGQNL
KYDASVLARYDIELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGK
NQLTFNQIELEQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVPVLSRIE
RTGVFIDEMKLSAQSVEITARLDELEKKAYEIAEQEFNMNSPKQLQAILFEKMGLPVVKK
TPSGTPSTNEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSYHQ
AVTATGRLSSTDPNLQNIPIRNEAGRRIRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQ
ALLDAFRDGKDIHAATAAEIMGLDIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPR
GEAQAYMDKYFERYPGVMQYMEDTRSTAADKGYVETIFGRRLHLPEIKSRNGMRRKAAER
AAINAPMQGTAADIIKKAMLLVDQWIQEEGNGRVKLLMQVHDELVFEVEESSLSEIESKV
QKLMESAAELKVPLVAEAGHGDNWDQAH
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcaagtattcctgaaaatccgttgatccttatcgacggctcttcttacctatatcgc
gcttttcacgcctacccgggcaccatgagtaatggtgaaattccaactaatgccgtttac
ggtgtcgtgaacatgttacgcagcatgatgcgtcagtttgcgtctgagcgcatcgcggtg
gttttcgatgcgaaaggaaaaaccttccgtgatgatatgtatgcagaatacaaagctaat
cgtccgccaatgccggatgatctgcgttgccaaattgaaccattgcacaatgttattcgc
gcgatgggtttaccactgatctgtgttcctggtgtcgaagcggatgacgtcattggtacg
ttggcgcatcaagcatcacaaaagggcatgcctgtattgatcagtactggtgataaagac
atggcgcagttggtggatgataatattaccctgatcaacaccatgacgaacgtcgtgatg
gatcgtgaaggtgtggttgaaaagtttggcattccacctgagttaatcatcgactaccta
gcgctgatgggcgataaagtagataacatccctggtgtaccaggcgtgggtgacaaaaca
gcgaccgcactactgcaaggtattggcggtctgactaagctgtatgaaaatctcgatgac
attgctgcgcttggcttccgtggttctaaaaccatggcgaagaagctcatcgataacaaa
gaaaatgccatgctgtcgtacgagctcgcgaccattaaattggatgttgaacttgaagaa
acgccagaatcactgctgaaagcggaaccaaataaagacgaactagtgaagttgtatggt
caactgacgtttaaatcttggttgaacgagctacttgaaggtggttctgggtcggtagaa
gctgttgagcttgctggctctgctcaaatgtcttcttctcatgctgagatggaaacttcc
gcagtgacaatcgaccgtagccaatatgaaacgattctggatgaagaaaccttcaatgcg
tggctagacaaacttcaaacggccgagttgtttgcgtttgatacggaaaccgacaaccta
gattacatgctagcgaacctggttggtttgtcattcgctgtcgatgaaggcattgccgct
tatgtgcctgttgcacatgactacctagatgcacctgaacagcttgatcgtgattgggtt
ctaggacagctgaagccaattcttgaagatgcagcgaaagcaaaagttggtcaaaactta
aagtatgatgcgtctgtattggctcgttatgatattgagctaaaaggtatcaagcacgac
acgatgttggaatcgtacatttacaacagtgtcggcggtaaacacgatatggacagcttg
gcgcttcgcttcctacaacacagctgcatttcttttgagcaaattgcaggtaaaggcaaa
aatcagctgacgtttaaccaaatcgagttggaacaagcatcgccatacgcggcagaagat
gcggatgtgacccttcgtctgcacaatcgcttgtttgcgaatatcgagcaggatgaaagc
ctgaagacagtgtacgaagagattgaaatgccgttggtgccagttctttcgcgcattgaa
cgcaccggggtctttattgacgaaatgaagctgagtgcgcagtcggtagagattaccgct
cgccttgatgagcttgaaaagaaagcgtatgaaattgcagagcaagagttcaacatgaac
tcgccaaagcaattacaagccatcctatttgaaaaaatgggtttaccggtggtgaagaaa
acgccatcaggtacaccatcgacgaatgaagaagtgctacaagagcttgccttagattac
ccactgccaaaattgattttggaatatcgcggtttggcgaagcttaaatcgacgtacacg
gacaagctgccgaagatgatcaacccaacaacagggcgtgtgcatacttcttaccatcaa
gcagtaaccgcaacaggtcgtctatcttctaccgatccgaacttacaaaacattccaatt
cgtaacgaagccggccgtcgtattcgccaagcgtttgtcgcaccatctgggcataagatc
ttagcggtcgactactcgcaaatcgaactgcgcatcatggctcacctttctggcgaccaa
gcgttattagatgccttccgtgatggtaaagacattcacgcggcaactgcggcagaaatt
atgggtctggatattgaacaagtatcgagcgagcagcgtcgtcgtgctaaagccgttaac
ttcgggcttatctatggcatgagtgcatttggtttggcgaagcagcttggtatccctcgc
ggcgaagcacaagcctacatggataaatactttgagcgttaccctggcgttatgcagtac
atggaagacacgcgcagcacggctgcagataagggctatgttgaaacgatttttggtcga
cgtttgcatttaccagaaatcaaatcgcgcaacgggatgcgtcgtaaagctgctgaacgt
gcggcaatcaacgcaccgatgcaaggtacagctgcggacatcattaagaaagcgatgctg
ttggttgatcagtggattcaggaagaaggcaatggccgtgtgaagttgttaatgcaagta
cacgatgaattggtctttgaagttgaagagtcatcattgtccgaaattgaaagtaaagta
cagaaattgatggaatctgcagcagagctaaaagtaccattggttgcagaggcagggcac
ggtgacaactgggatcaagctcattag
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