Vibrio sp. STUT-A16: VspSTUT16_32560
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Entry
VspSTUT16_32560 CDS
T10420
Symbol
gcvP
Name
(GenBank) glycine dehydrogenase (decarboxylating)
KO
K00281
glycine cleavage system P protein (glycine dehydrogenase) [EC:
1.4.4.2
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis00260
Glycine, serine and threonine metabolism
vis00630
Glyoxylate and dicarboxylate metabolism
vis00670
One carbon pool by folate
vis00785
Lipoic acid metabolism
vis01100
Metabolic pathways
vis01110
Biosynthesis of secondary metabolites
vis01200
Carbon metabolism
Module
vis_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VspSTUT16_32560 (gcvP)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
VspSTUT16_32560 (gcvP)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
VspSTUT16_32560 (gcvP)
00670 One carbon pool by folate
VspSTUT16_32560 (gcvP)
Enzymes [BR:
vis01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
VspSTUT16_32560 (gcvP)
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Gene cluster
GFIT
Motif
Pfam:
GDC-P
GcvP2_C
Beta_elim_lyase
Aminotran_5
RNase_H2-Ydr279
TFC3_eWH
Motif
Other DBs
NCBI-ProteinID:
BDR19910
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All DBs
Position
2:138180..141044
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AA seq
954 aa
AA seq
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MTELLQSLSTQNEFVGRHNGPSKSDQQKMLDAINAVSLDALIEETVPAQIRLEQPMTLAE
AKSEADMLVTMKQFAKQNQIKRTFIGQGYYNTFTPNVILRNVLENPGWYTAYTPYQPEIS
QGRLEALLNFQQMIIDLTGMEIANASLLDEATAAAEAMTLCKRAGKSKSNVFFVADDVHP
QTLEVVKTRAKFIGFEVLVGSLESLPEQDVFGALVQYPSTTGEVRDLTDIIAKAQANKTL
VTVATDLLASTLLKPAGEMGADVAIGSAQRFGVPMGYGGPHAAFMATRDKHKRTMPGRVI
GVSIDTNGNQALRMAMQTREQHIRREKATSNICTAQALLANMASFYAVYHGAEGLRTIAR
RTHHMTAIIAAGLTKGGFELAHNSFFDTITINTGSKTEELYAKALSADINLRLLPGKLGI
SCDETTTVADVEALFSVFGVKEDVAALSTEIAGNEFAAIPETLRRTTEYLTHPVFNTHHS
ETQMMRYLKQLENKDFSLTHGMIPLGSCTMKLNAAAEMIPITWPEFGSIHPFAPAEQAAG
YAALAKDLKEKLCEITGYDAFSLQPNSGASGEYAGLIAIQRYHESRGEGHRNVCLIPSSA
HGTNPATASMVSMKVVVVKCDEEGNIDIDDLAAKIEKHKDNLSSIMITYPSTHGVYEEKV
KEVCEMVHAAGGQVYLDGANMNAQVGLTSPGFIGSDVSHLNLHKTFCIPHGGGGPGMGPI
GVKSHLAPFLPGHIEDGVEGEDFAVSAADMGSASILPISWAYIAMMGEAGLTDATKVAIL
NANYVMETLRQHYPVLYRGKNGRVAHECIIDIRPLKEETGISEEDIAKRLMDYGFHAPTM
SFPVAGTLMVEPTESEDLEELDRFCDAMIAIREEMEKVKNGEWPLDNNPLVNAPHTQVDL
SAEEWDRPYSRELGCFPSKATKSWKYWPTVNRVDNVYGDRNLICSCPSIDNYED
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgactgaattacttcaaagcctcagcacacaaaatgagttcgttggacgccacaacgga
ccaagcaaatcagaccaacaaaaaatgttggatgccatcaacgcggtaagccttgacgcc
ctcatcgaagaaactgtgcctgcacaaattcgcctagagcaaccaatgacgttggcagaa
gcgaaaagcgaagcagacatgctagtgacgatgaagcagtttgctaaacaaaaccaaatt
aaacgtacattcattggccagggctactacaacacgtttactccaaacgtcattctacgt
aacgtgctagaaaaccctggctggtataccgcttacacaccttaccaacctgaaatctct
caaggtcgcttggaagcacttttgaacttccaacaaatgatcatcgacctaactggtatg
gaaatcgcgaacgcctcattgctagacgaagcaacagcggcagcagaagcaatgactctg
tgtaagcgcgcaggtaagagcaagagcaacgtattctttgtggctgacgatgttcaccca
caaacgctagaagtagtaaaaactcgtgcaaaattcatcggctttgaagttctggttggt
tcgctagaatccctaccagagcaagacgtgttcggtgcattagttcaatacccaagcaca
acaggtgaagttcgtgacctaacggacatcatcgcaaaagcgcaagcaaacaaaacgctt
gtcactgttgcgactgacctgcttgcttctaccctattgaaacctgctggtgaaatgggc
gcagacgtagcaattggctctgcacaacgtttcggcgttcctatgggttacggcggtcca
cacgcggcattcatggcaacgcgtgacaaacacaagcgtaccatgccaggtcgtgttata
ggtgtttctatcgataccaacggtaaccaagcactgcgcatggcaatgcaaactcgtgag
cagcatatccgccgcgaaaaagcgacatcgaacatctgtaccgctcaagcattgctagcg
aacatggcgtctttctacgcggtttaccacggcgcagaaggtctacgcactattgctcgc
cgtacacaccatatgactgcgattatcgccgctggcctaaccaaaggcggctttgaactt
gctcataacagcttcttcgataccatcaccatcaacacaggttcaaaaacagaagagctt
tacgcaaaagcactttcagcagacatcaacctacgtctactacctggcaagctaggtatt
agctgtgacgaaacaaccacggtcgctgatgtagaagcactattttcagtctttggtgta
aaagaagacgtagcagcactatcgacggaaatcgcaggcaacgagtttgcggcaattcca
gaaacgctacgccgcacaacagaatacctgactcaccctgtattcaatacgcaccatagc
gaaacgcaaatgatgcgttacctgaaacagctagagaacaaagacttctcgctaacgcat
ggcatgatcccactaggcagctgtacgatgaagctgaacgcagcagcagagatgatccca
atcacttggcctgagtttggttctatccacccattcgcgccagcagaacaagcggcaggc
tatgcagcactagcgaaagatctaaaagagaagctttgtgagatcacaggctacgacgca
ttctcacttcagccaaactctggtgcatcgggtgagtatgcaggtcttatcgcgattcaa
cgctaccacgaaagccgtggcgaaggtcaccgcaacgtatgtttgatcccgagctctgct
cacggtacaaaccctgcaacggcgtctatggtgtcaatgaaagttgtggttgttaagtgt
gatgaagaaggcaacatcgacatcgatgacctagcagcgaaaatcgagaagcacaaagac
aacctatcaagcattatgatcacttacccttctacgcacggcgtttacgaagagaaagtg
aaagaagtgtgtgaaatggttcatgccgccggcggtcaggtttacctagacggcgctaat
atgaacgcgcaggttggtctaacatcaccaggcttcatcggttcagacgtttctcaccta
aacctacacaaaaccttctgtatcccacatggtggtggcggtccgggtatgggtcctatc
ggtgtgaaatctcacctagcgcctttcctaccaggccatattgaagacggcgtagaaggc
gaagattttgcagtatcagcagcagatatgggtagcgcttctatcctacctatctcttgg
gcttacatcgcaatgatgggcgaagcaggcctaacagatgcaacaaaagtagcaattctg
aacgcaaactacgtgatggaaacacttcgccaacactaccctgttctttaccgtggcaaa
aatggtcgtgtagcgcacgaatgtattatcgacattcgtccactgaaagaagaaacaggc
atcagcgaagaagacattgcgaagcgtctaatggactacggtttccacgcaccaactatg
tcgttccctgtggcgggcacgctaatggttgagccaacggaatcggaagatctagaagag
ctagaccgcttctgtgatgcgatgatcgctatccgcgaagaaatggaaaaagtgaaaaac
ggtgaatggccactagataacaacccacttgttaacgcgccacacacacaagttgatctt
tctgctgaagagtgggaccgtccttactctcgagagcttggctgctttccttctaaagca
accaaatcttggaagtactggccaacggtaaaccgcgtagataacgtatacggcgaccgt
aacctaatctgctcgtgcccaagcatcgataactacgaagattaa
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