Vibrio sp. STUT-A16: VspSTUT16_45350
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Entry
VspSTUT16_45350 CDS
T10420
Symbol
rnr_2
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VspSTUT16_45350 (rnr_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vis03019
]
VspSTUT16_45350 (rnr_2)
03016 Transfer RNA biogenesis [BR:
vis03016
]
VspSTUT16_45350 (rnr_2)
Enzymes [BR:
vis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VspSTUT16_45350 (rnr_2)
Messenger RNA biogenesis [BR:
vis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VspSTUT16_45350 (rnr_2)
Transfer RNA biogenesis [BR:
vis03016
]
Prokaryotic type
tRNA degradation factors
VspSTUT16_45350 (rnr_2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
OB_RNR_1st
DUF7935
CSD
Motif
Other DBs
NCBI-ProteinID:
BDR21189
LinkDB
All DBs
Position
2:complement(1554812..1557058)
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AA seq
748 aa
AA seq
DB search
MKLNISAQSINSNNYEHIIPSRDVILSLFDKVKNHLSHEQISRSTGLDEKPQKDALKKRL
RAMERDGQLIFTHRRGYKKVDQTALVSGKVSIHADGFGFVTYDSNEKDLFLPKHQLTNVF
DGDIVLVLKGNAQHQGRSNHRFIKIVERKTTHIVGLLKRKGSNFYLVPESAKLTQTIHVT
PNDLITKSAGKLVHCKVTAYPDHRQSTTVEVAEVLGRPGEAGIEVKLALRRHGINDHWDD
EVLHAASAFGNHVEEKDKTSRVDYRDLPFVTIDGDDAKDFDDAVYAYQMDNGHWKLFVAI
ADVSHYVQPNDHLDLEAQSRATSVYFPGYVVPMLPETLSNGLCSLNPNEDRLVMVCEMTF
DDEGNMLDSEFSEGIIHSHARLTYNEAYRIVSQSAEAKTYQGKNPKQNIKQHLVNLHRLY
LNLSGQRQVRGAIDFDTQELSFTLNNKKKIASIVPVVRNDAHRMIEEFMLCANVATAQFL
QQQKIPSLYRVHSGPQMKKLSSLRMMLADKGLTLAGGDKPTSHDYNALLEQVRDLDECDV
IRTLLLRSQSQAEYSPKNMGHFGLAYDAYAHFTSPIRRYPDLLVHRAIRAKLREQKTGKL
RSLLMKLKPIRQLTGAANNYPYDTKVIEQLSVHCSHQSRQADEVSREVESALKCHYMKPF
IGQHFMGTVSGVTHFGVFVELEESRIEGLIPLSSFQNGEFEFDAVKQKISSQSTTFTLGT
KVHVLVKDVDSKQRKIMFNLKDAEHTVG
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgaaattaaatatatccgcacaatcaataaattctaataattacgagcacattatccct
agccgagacgttatccttagcctattcgataaagttaaaaatcacttaagtcacgagcaa
atttctcgctctactggcttagatgagaaaccacaaaaagacgctttaaaaaaacgttta
cgcgctatggagcgcgatggccagttgattttcacgcatcgccgtggttataagaaagtc
gatcaaaccgctttggtttctggaaaggtcagcattcacgcagacggctttggttttgtc
acttacgacagtaatgaaaaagaccttttcttacctaaacaccaacttactaatgtgttt
gatggcgatatcgtactggttctgaaaggcaatgctcagcatcaaggacgctcaaatcat
cgtttcatcaaaatagtggaacgaaaaacaacacacatcgtgggcttgttaaagagaaaa
ggttcgaacttctatctagtgccagaaagcgcgaaactgactcaaaccattcatgtcaca
ccaaatgatcttatcaccaaaagtgccggtaaactcgttcattgtaaagtcactgcctat
ccagatcacagacaatcaacaacggttgaagtggcggaagtattagggcgtccgggagaa
gcagggattgaagttaaattggcgttacgtcgacatggcatcaatgatcattgggatgat
gaagttcttcacgccgcctccgcatttggcaatcacgtagaagaaaaagacaaaacgtcc
cgagtggattatcgagatttaccgttcgtcactatcgatggggacgacgcgaaagacttt
gatgatgccgtttacgcataccaaatggacaatgggcattggaagttattcgttgcgatt
gcagacgtatctcactacgttcagccaaacgaccatttagatcttgaggcgcaatctcgt
gcaacgtccgtttacttccccggatacgttgtaccaatgctaccagaaacattatctaac
ggtttgtgctcgcttaacccgaatgaagacagattggttatggtatgtgagatgaccttt
gacgacgaaggtaacatgctagattcagagttttctgaagggatcattcactcgcatgct
cgtttaacttataacgaagcttaccgcattgtttcccaatcagcggaagcaaaaacatac
caaggtaagaacccaaaacaaaacattaaacagcatctggtgaatctccatcgcttgtat
ttgaacctatctggtcaacgtcaagtccgtggtgccattgattttgacacgcaagagctt
tcattcacgttaaacaataaaaagaaaatcgcgtccatcgttcctgtagttcgaaatgat
gcccaccgaatgatcgaagaattcatgctgtgtgccaacgttgccaccgctcaatttttg
cagcaacaaaaaataccgagcttataccgcgtgcactctggtcctcagatgaaaaaactg
tcttcattaagaatgatgcttgcagacaaagggctaacgcttgcgggtggtgataaacca
acttctcatgactacaacgcattactggaacaagtacgagatttagatgagtgtgatgtg
attcgtaccctactgctacgttctcagagtcaagccgagtattcgccgaagaatatgggt
cacttcggtttagcctatgacgcatacgcacactttacttcgccaattcgtcgttaccca
gacttactcgttcaccgcgccattcgcgctaaacttcgagagcaaaaaacaggcaagcta
cgcagtctgctcatgaaactaaaacctattcgtcaattgacaggtgctgcgaacaactac
ccttacgatacaaaagtaatcgagcaactgagcgtgcactgttcgcatcaatctcgtcag
gcagatgaagtgagtcgagaggttgagtcagcactgaaatgtcattacatgaagccattt
atcgggcaacacttcatggggacggtgtctggagtcacacacttcggagtatttgttgag
ttagaggaaagccgaatcgaaggtctcattcctttatcaagttttcaaaatggagagttc
gaatttgatgcagtcaaacaaaaaatttctagccagagcaccacgtttactttagggact
aaagtgcacgtgttagttaaagacgtcgattcgaaacaaagaaagatcatgttcaattta
aaagatgcagaacacacggtaggttag
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