Vibrio sp. STUT-A16: VspSTUT16_45650
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Entry
VspSTUT16_45650 CDS
T10420
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vis Vibrio sp. STUT-A16
Pathway
vis03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VspSTUT16_45650 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vis03019
]
VspSTUT16_45650 (deaD)
03009 Ribosome biogenesis [BR:
vis03009
]
VspSTUT16_45650 (deaD)
Enzymes [BR:
vis01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VspSTUT16_45650 (deaD)
Messenger RNA biogenesis [BR:
vis03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VspSTUT16_45650 (deaD)
Ribosome biogenesis [BR:
vis03009
]
Prokaryotic type
rRNA helicases
VspSTUT16_45650 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDR21219
LinkDB
All DBs
Position
2:1592393..1594327
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AA seq
644 aa
AA seq
DB search
MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKIDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKSGAQVIVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKKIVERFLREPVMVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLDIDPAT
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAAGKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGGYRGNREGGNRGGDRREGGRREGGFRG
NRDGNRDGNREGGERRFDRNRGGDHRGNHRGERGHGRGRRTQEA
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacacctg
ttggaaggtgctgacgcgctgggtaaagctcaaacaggtacaggtaaaacggcagcgttc
tctctgcctcttctaaataagatcgatctcaaccaacgtaaaccacaagctatcgttctt
gcgccaacgcgtgagttagcgattcaggttgcggctgaaatgaaaaaccttggtaagaac
atcaagggtcttaaagttttagagatttacggtggtgcttctatcgtagatcagatgcgt
gctcttaagagcggtgcacaagttattgttggtactccaggtcgtgtacaagaccttatc
aaccgtgaacgtctacacctagatgaagtaaacacgtttgtactagacgaagctgacgaa
atgctaaacatgggtttcgttgatgacgttactgcgatcatggaacatgcaccagagtcc
gctcaacgcgttctattctctgcaacaatgcctccgatgcttaagaaaatcgttgagcgt
ttcctacgtgagcctgtaatggttgacgttgctggtaagaaccacactgtagacaaagtt
caacagcagttctgggtagtgaagggtgtagagaaagatgaagcgatgtctcgtcttctt
gaaacggaagaaactgatgcatcaatcgtcttcgtacgtactcgtcaagacactgagcgt
ctagctgattggctatctgcacgtggctttaaagcggctgctctgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgtggcacgtggtcttgatgttccacgtattacgcacgtattcaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgctgga
cgtaagggtaaagctatccttctagttcgcactaaccaaattcgtatgcttcgcactatc
gagcgtgtaactaagtcatctatggaagaaattcaacttcctctacgtgaccaagttgct
gaagctcgtctagctaaactaggcgctgagcttgaagcagagaaagagcacaaagctcta
gacaaatttgctgagctggtagagaaactacaaacttctctagacatcgacccagcaacg
cttgctgctatgcttcttaagcgccagcaaggtaaacgtcctctgttctacattggcgaa
gatccaatggttgaagcgattgagcgtgataagcaacgccgcaaagagcgccgtgaaggt
ggtcgtgacggcggtcgtaacttcaacaaccaagattgggatacttaccagcttcaagtt
ggtcgcgagcaaggtgttcaagttaaagacatcgttggtgctctagcgaacgaactaggt
ctaggtaaaggctctatcggtgcgatcaagctagcacaaggccacacattcgttcagtta
ccaaaagcaatgacttctgaagctgcgggcaagctaagcaaactacgcatccgtcaacaa
gatgttggtgctgtagtatgtgacttcgatgacttccgagagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggtcgtcgtgatggcggcggttaccgtggcaaccgcgaa
ggcggcaaccgtggtggtgatcgtcgtgaaggcggtcgtcgcgaaggtggcttccgtggt
aaccgtgacggcaaccgcgatggtaaccgtgaaggtggcgaacgtcgcttcgatcgtaac
cgtggtggtgatcaccgtggtaaccaccgtggtgagcgtggtcacggccgtggtcgtcgc
actcaagaagcataa
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