Vibrio sp. STUT-A16: VspSTUT16_46860
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Entry
VspSTUT16_46860 CDS
T10420
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vis Vibrio sp. STUT-A16
Brite
KEGG Orthology (KO) [BR:
vis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vis03400
]
VspSTUT16_46860 (sbcC)
DNA repair and recombination proteins [BR:
vis03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VspSTUT16_46860 (sbcC)
Archaeal homologous recombinant proteins
VspSTUT16_46860 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_27
AAA_16
DUF6494
AAA_5
Band_7_1
Crb2-like_BRCT-like
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BDR21340
LinkDB
All DBs
Position
2:1735860..1738916
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAKTEVIDFEKLGRNPLFLINGPTGSGKTSILDAICFALYGETTGNE
RQGIQMRCDLSAQDLPTEVVLEFSLHGKQYRVVRSPEQEAPKARGEGMTVKKHTAALYEL
GETEKLITSKTTQVKTEVSNIIGLNETQFRQVMVLPQGKFRELLLASSKEREEIFGQLFQ
TDIYKKIEYALKDKASAISKAKDEFDNQIRGALQVAGVSSEQELLHQLEQAAEQLEVDRK
NEQASLDKLNVAKSELQKAETINGEFSKREQAENALKLHLEHSDSIKARQQQLENAKNAN
KIELPYVSLQNAKAQTQELRQKIVALKESLDKANAVTKEKENLQQSAKEAAAKVPQLTQL
QYQLESMKDKLVEKANLERKITAGHQQKQQVEATLKQYIELKDKLAFQAQQGQKDLEQAR
VDVALVGSIDAEIKQKQRLLQDLQKLHGLTLELSKLTALTVSKQQSLQEASQRYMQCQHA
ADTIELKWHNAQAAVLAQRLKAGEACPVCGSQAHPNPATFVEEVVTKEQVQAARVKEREA
QTSLNQLSNQLEQHNVVIIQHQNQIDQLKEELGEHAASEISTVQTELQALNDQLLRLQSI
DIEKLEKNVEQLNQRCLVGENKIHELQNQMAANESTVQANQEQLTQLQASIDPKYSSVGA
LELEITLTKEQILTLNTGLEKAQNALQQAVLAQSNAESQLVTNKQWLSESEQKLSQAELA
WNEALQASKFEDESCYLNSRVTDDELQAWQKEIDNFKQTQTKLEQTLHDLNHALKALERP
DLDSLNDSLTTLQAQYIEIRNQLDTTRSTFERIEKVRKDIATLHEKNSKLEEEYKVFGTL
YDVASGKTGSRVSLHRFVLGVLLDDVLIQASQRLSLMSKGRYILARKTEGFKGAAGRGLD
LMVEDGYTGKTRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQTGRMIGVISHVSELKEQMAQRIDVEPSRVGSTVSIKSLCRFAV
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatcaaacttaccatgcaagcctttggtccgtttgcaaaaaccgaagtcatt
gactttgaaaagcttggccgcaaccctctgtttttgattaatggtcctacaggctcaggt
aaaacgtcgatcttagatgccatttgctttgccctttacggtgaaactaccggtaatgag
cggcaaggcatccagatgcgatgtgacttatcggcgcaagacttaccaaccgaagtcgtt
ctagaattttcgttacatggcaaacaataccgagttgtgcgatctccagagcaggaagca
cccaaagcgcgtggcgaagggatgacggtaaaaaagcacactgcggctctttatgaactc
ggcgagaccgaaaagctcatcactagcaagacgactcaagttaaaacagaagtgagcaat
attattggtttgaatgaaacgcaatttcgccaagtaatggtattgcctcaagggaaattc
cgggagctgttgcttgctagttctaaagagcgcgaagaaatttttggtcagctctttcaa
acggacatatataaaaaaattgagtacgcgctcaaggataaagcgagcgcaatcagtaaa
gcgaaagatgaatttgataatcaaattcgaggcgctttacaagttgcaggagtgagttca
gagcaggaattattacaccagctcgaacaagcagctgagcagctagaggtcgatagaaag
aatgaacaagcttcgttagataagctaaatgttgctaaatctgaattacaaaaagcggaa
actattaatggagagttttcgaaacgagagcaagcagaaaacgcactcaagctgcatcta
gaacattcagactcgataaaagctcgtcaacagcaattagaaaacgctaaaaatgccaat
aagatagaattaccctacgtttcattacagaatgcaaaagctcaaactcaagagctcaga
caaaaaatagttgccttgaaagagagtcttgataaagccaatgctgttacgaaagaaaaa
gaaaacttgcagcaaagtgcaaaagaagccgcggcaaaagtcccacagttaacgcaactg
cagtatcaacttgaaagcatgaaagacaagttggttgaaaaagccaacttggaaagaaaa
ataacggcaggtcatcaacaaaaacaacaagttgaagcaacgttaaaacagtacatagag
ctgaaagacaagttagcgtttcaggcgcaacagggccagaaagatctagagcaagcccga
gtagatgttgcgcttgttggaagcatcgatgcggaaataaaacaaaaacaacgactacta
caggatctacaaaagctgcatggtcttactttggagctctctaaactcacggcgttaacc
gtaagcaagcagcagtcattacaggaagccagtcagcgctatatgcagtgtcaacacgcc
gctgatacgatagagcttaagtggcataatgctcaagcggcagtattagcgcagcgacta
aaggcaggtgaagcatgtccggtatgtggcagccaagcgcatcctaaccctgcgacgttt
gttgaagaagtcgttacaaaagagcaagttcaggctgccagagtgaaagaaagagaagct
caaacctcactgaaccagctaagtaatcagctagaacaacataacgttgtcattattcag
catcagaatcaaatcgaccagttgaaagaagagcttggtgagcatgcagcatctgagatc
tcgacggttcaaactgagttgcaggcgcttaatgatcaacttctacgtctacaatctatt
gatattgaaaagctagaaaagaacgttgaacagcttaatcaacgctgcttagtgggtgaa
aataaaattcatgagctgcagaatcaaatggcggcaaatgaatcaaccgttcaagcaaac
caagaacaattgactcagttacaagcttctattgatccgaaatacagttccgttggcgcg
cttgagctcgaaattacgctgacaaaagagcaaattctgaccttgaatacaggtttagaa
aaggcgcaaaacgctttgcagcaagcggtattagcgcaatcgaatgctgaaagtcagtta
gtgacgaacaagcagtggctatctgagtcagaacaaaagcttagccaagcagaattagcg
tggaatgaggcattacaggcgagtaaatttgaggatgaaagctgttatctaaatagcaga
gtgacagatgatgagcttcaagcgtggcagaaagaaatagacaacttcaaacagacacaa
accaagcttgaacaaacactacatgatttaaaccatgcattgaaagcgcttgaaagaccg
gacttggattcgcttaacgacagcttaaccactctgcaggcgcagtatattgaaataagg
aatcagctcgataccacgcgctcaacctttgagcgaattgaaaaagttcgtaaagatatt
gctacgctgcatgagaaaaatagcaagttagaagaagagtacaaagtgtttggtacgtta
tacgacgttgccagcggtaaaacaggcagcagggttagcctgcatcgctttgttcttggt
gtactgttggatgatgttttaattcaggcctctcaacgtttaagcctcatgagtaaaggg
cgctatattcttgctcgaaaaacagagggcttcaaaggcgctgcgggtcgcggcttagat
ttaatggttgaagatggctacacaggaaaaacacgtgatgttgcgacactttccggtggt
gaatcgtttatggcagcgcttgctttggcgcttggcttgtcggatgttgtgcaatcctat
agtggtggtatccgtttagacactttattcattgatgaggggttcggtagtttagaccca
gaatctttggatctcgcgattcaaacgctagtggatttacaacagactggacgcatgatc
ggtgttatttctcacgtttctgagttaaaagaacaaatggcgcagaggattgatgttgaa
ccatcaagagtcggttcaacggtgtcgattaaatctctatgtcgtttcgctgtctaa
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