Vitreoscilla sp. C1: ADP71_08810
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Entry
ADP71_08810 CDS
T05336
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vit
Vitreoscilla sp. C1
Pathway
vit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADP71_08810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vit03019
]
ADP71_08810
Enzymes [BR:
vit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ADP71_08810
Messenger RNA biogenesis [BR:
vit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ADP71_08810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UvrD-helicase
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QJQ52177
UniProt:
A0A6M4CA55
LinkDB
All DBs
Position
724245..725693
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AA seq
482 aa
AA seq
DB search
MNAFNTLGLSNEIVRALDEQGYTTPTPIQAAAIPKVLAGHDILAAAQTGTGKTAAFMLPS
LERLKRFANTSASPAMHPVRMLVLTPTRELADQIDANITSYIKYLPLKHTVVFGGTNMDT
QVQALRSGREIVVATVGRLLDHVSQKTIQLNKVDILVLDEADRMLDMGFIDDIRKIIAML
PKNRQILLFSATFAPEIKRLANDFMHLPEIIEVAAQNATNKNVEQHMIAVDASRKRHLLE
RLIVDLDMPQVIVFCKTKISVDQVTRDLSRKGIVAKAIHGDKAQQTRTETLAAFKEGKVK
VLVATDVAARGLDISEFPFVINYELPSNPEDYVHRIGRTGRAGAEGIALSLMDETEQRMY
ESICKLIKQDLPLDKIENFEPRWMQKHEAQSTHTTSGQLVVAASRAPKEAAVTKDKPRAA
HPSNTQARKSALAAASSVESKTDVALDDFPDSPLIKGRRRRGVRSQRLSCALLQSNFGVK
RR
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcttttaatacattgggtttgtccaatgaaatcgtccgagctttggacgaacaa
ggttataccacgccaacaccgattcaggccgctgccattcccaaagttttggcaggtcat
gatattttggcggctgcacaaacaggtacgggcaaaacggctgcttttatgttgccaagc
ttggagcgtttgaagcgttttgccaataccagtgcttcacctgccatgcatcctgtgcgc
atgttggtattgacgccaacgcgtgagttggccgaccaaattgatgccaatatcacttct
tacatcaaatatttgccgttgaagcacacggtggtgtttggtggcaccaatatggatacg
caagtgcaggctttgcgcagcggacgtgagattgtggtggcaaccgtgggtcgcttgctt
gatcatgtctcgcaaaaaaccatccaattgaacaaagtggacattttggtattggatgaa
gccgaccgcatgttggatatgggcttcattgatgacatccgtaaaatcattgcgatgttg
ccaaaaaaccgtcaaattttgttgttctccgccacgtttgcacctgaaatcaagcgtttg
gccaatgattttatgcatttgcctgaaatcattgaagtagcggcacaaaacgctaccaat
aaaaatgttgaacaacacatgattgcggtggatgcttctcgcaaacgccatttgttagag
cgtttgattgtagatttggacatgccacaagtgattgtgttttgtaaaaccaaaatcagt
gtcgatcaagtgacgcgtgatttgtcgcgcaaaggcattgttgccaaagccattcacggt
gacaaagcgcaacaaacccgtaccgaaactttggcggctttcaaagagggtaaagtgaaa
gttttggttgcgaccgatgtggcggcgcgtggtttggatatcagtgaatttccgtttgta
atcaattacgaattgccaagcaatccagaagactatgtacaccgtattggtcgtacaggc
cgcgcaggtgcagaaggcattgcattgtccttgatggatgaaaccgaacaaagaatgtat
gagtcgatttgcaaactcatcaaacaagatttgcctttggataaaatagaaaattttgag
ccacgttggatgcaaaaacacgaagctcaaagtacacataccacttcaggtcagctggtt
gtggcggcgagcagagcacccaaagaagctgctgtgaccaaagacaagcctcgtgctgct
catccttccaatacccaagcgcgtaaatcagcgctggctgccgcgtcatctgtggaatct
aaaaccgatgtggcattggatgattttcctgactcacctttgattaagggtcgtcgtcgc
cgtggagtgcgcagtcagcgtttgtcttgcgctttgttacagtctaattttggcgtcaag
cgtcgctag
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