Vitreoscilla sp. C1: ADP71_08880
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Entry
ADP71_08880 CDS
T05336
Name
(GenBank) subunit beta of exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vit
Vitreoscilla sp. C1
Pathway
vit03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vit00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
ADP71_08880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vit03400
]
ADP71_08880
Enzymes [BR:
vit01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
ADP71_08880
DNA repair and recombination proteins [BR:
vit03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
ADP71_08880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
ResIII
AAA_22
AAA_11
DUF3860
Motif
Other DBs
NCBI-ProteinID:
QJQ52178
UniProt:
A0A6M4CAU6
LinkDB
All DBs
Position
complement(728150..731788)
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AA seq
1212 aa
AA seq
DB search
MQAETFNALSIPINATNLIEASAGTGKTWSIAALFLRLVLLERIAVDKVLVVTFTNAATA
ELKTRLRSRLDEALRELKDLPDDNASALLEEIYTQKNAAEDAPEFEPFLYEVLQLALQQE
AASRVRLRLQAALNQFDHAGIFTIHGFCQRVLREFAFLCQVPFQISLSDDTAIAKQRIAA
DFWRKHVIEDEQRARLCFEHNITLNDALNRIQNWFGRSEHHIQFQLAQPSHALEDLHAQL
DELAQAILLQLEEWKISFTDMHPMLNGTTFKLPTYLTLFDDLAQWLPRQQWHKISSKEKH
ILNLQAAYLQEKTKKGQVLSDTQLNQFAPLHRLLDLCLSLKTEQDALFDQLHLDLYHYLL
PNWQQEKQRVQQLGFDDLLTDVAKALQDEKYGLHLASYLSEHMWQVALIDEFQDTDPLQY
GIFDTIFRQHHKPVFLVGDPKQAIYRFRGADIHAYLQAKHEANRLYTLDTNRRTHQQLVA
SINALFLNKNKPFLLDDIDYIDVQAARADSRLLPNDTPLEIQCLLQGDETYLNKEQAKPR
AALYCALDIARHLALSSQGKLQYDGGPLQAKHIAVLVRTHGEGELVQKELRKEGISSVIL
SRDSIFACEQAKPVLSLLQWWQAPQQQGLLRSVLASDLLNYRSSDLMRLNHADSQDELIG
WMEDALQAQQVWQQRGVYAAWQMFDKKRGISADFLRRNDKRGLTNVQQLFELLAKEESER
FGAASLIQWLNEQVSQQTHGEAYTLRLESDEELVKIVTMHASKGLQYPVVFCPFVWDHRD
FKTSEFNIVHQNGQVRIVSEYCLSQDDEVSLIEDERSETLRLLYVAFTRAEEKLILSCSL
LKDNGSANNVLHHLIAGEPDHSWEQTHALWANAGKDKRVWYQDLWLQWAQKYHVNLLWRP
EQPEYSGLIQQQIQRTEYTALQTALPFYRFQEYTSFSGISRHISHLAMDELVPEIDVGEL
QDDQVVLDEETVLPEAHEFDIFHFQRGTDAGLCLHALLEHTDFQQSAISQSDVYAPILER
YHIDESWQPALYAMIDATRLAHLDADVCLADLPPEQCLAEMGFVLNVNQFTAADIQQCLL
ESHLPSAIKQAAQGLHFRDVMGFLNGFIDLVCVNLDGKVYVIDYKSNHLGMLPKDYHTNA
LNLAINDHHYYLQALIYAIAVGRYLRSRHFDFDAIHIRYLFLRGLQPASEQGVWRWDIGI
DELDKIDAVLAS
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctgaaaccttcaatgctttgagcattcccatcaacgccaccaatttgattgaa
gcatccgcaggcacaggcaaaacttggagtattgccgcgttgtttttacgtttggtgtta
ctcgaacgcattgctgtcgacaaagtcttggtcgtgacttttaccaatgcggccactgcc
gagttgaaaacccgtttgcgcagccgcttagatgaagccttgcgtgaattaaaagacttg
cccgacgacaacgccagcgccttattggaagaaatatatacacaaaaaaacgctgcagaa
gatgcgccagagtttgagccatttttgtacgaggtgttgcaactggctttgcaacaagaa
gctgcttcacgtgtgcgtttgcgtttacaggccgctttaaaccaatttgaccatgcgggc
attttcaccattcatggtttttgccaacgcgtcttgcgtgaatttgcctttttgtgccaa
gtgccctttcaaatcagtttgtcagacgataccgccatcgccaaacaacgcattgccgcc
gatttttggcgcaaacatgtgattgaagacgagcaacgtgcacgcttgtgttttgagcac
aacatcactttgaacgatgctttaaatcgcattcaaaattggtttggacgctctgaacac
cacatccaatttcaattggcacaacctagccatgccttagaagacttacatgcccagtta
gatgaattggcgcaagccatattgctccaattggaagaatggaaaatctcgttcaccgac
atgcatccaatgctcaatggcaccacgttcaaattaccgacttatctgaccttgtttgac
gatttggcacaatggctgccccgccaacaatggcacaaaatcagcagcaaagaaaaacac
attctcaatttacaggccgcttatttacaagaaaaaaccaaaaaaggccaagttttaagc
gatacacaactcaatcaatttgcaccattacaccgtttattggatttgtgtctgagcctt
aaaaccgaacaagacgctttatttgaccaattgcatttggatttgtaccactatttgcta
cccaattggcagcaagaaaaacaacgagtacaacaattgggctttgatgatttgctcacc
gacgtggccaaagcgttgcaagatgaaaaatacggtttgcatttggcttcttacttgagt
gaacacatgtggcaagtggctttgatcgatgagtttcaagacaccgatcctttgcaatat
ggtatttttgacaccattttccgccaacatcacaaacctgtgtttttggtcggtgatccc
aaacaagcaatttaccgctttcgtggtgcagacatccacgcttatttgcaagccaaacac
gaagccaaccgcttgtatacgttggacaccaaccgccgcacccaccaacaattggtcgcc
agcatcaatgccttatttttgaacaaaaacaaaccctttttattggacgatatcgattac
atcgacgtacaggccgctcgtgctgacagccgcttgttacccaatgacacaccgttggaa
atccaatgtttgttgcaaggcgatgaaacttatctgaacaaagaacaagccaaaccacgc
gcggctttgtattgcgcattggacattgcacggcatttggcgttgagcagccaaggcaaa
ctgcaatacgatggcggccccttacaagccaaacacattgcagtattggttcgcactcat
ggcgaaggcgaattggtacaaaaagaattgcgcaaagaaggcattagcagcgtgatcttg
agccgtgactcgatttttgcttgtgaacaagccaagcctgtattgagtttgttgcaatgg
tggcaagcaccacaacaacaaggcttgttgcgttcggttttggccagcgatttgctcaac
taccgcagcagcgatttaatgcgtttgaaccatgccgactcacaagacgaattgattggt
tggatggaagatgcattacaagcacaacaagtctggcaacagcgtggtgtgtatgccgct
tggcaaatgttcgataaaaaacgaggtatcagcgcagactttttaagacgcaatgacaag
cgcggcttgaccaatgtgcaacaattgtttgaattgctcgccaaagaagaaagcgagcgt
tttggtgccgcttcattgattcaatggctcaacgaacaagtcagccaacaaacccatggc
gaagcgtatactttgcgtttggagagcgatgaagaattggtgaaaattgtcaccatgcac
gcatcaaaaggcttgcaataccctgtcgttttttgtccatttgtatgggaccatcgtgac
tttaaaacgtctgaattcaatatcgtccatcaaaatggtcaagtgcgcatcgtcagcgaa
tattgcttgagtcaagacgatgaagtcagtttgattgaagacgaacgctcggaaaccttg
cgtttattatatgtggcgttcacacgtgccgaagaaaaattgattttgtcttgcagtttg
ctcaaagacaatggcagcgccaacaatgtcttgcaccatttgattgccggcgagcccgac
cactcatgggaacaaactcacgccttatgggccaatgcaggcaaagacaaacgggtgtgg
tatcaagacttgtggttgcaatgggcgcaaaaataccatgtcaatttattgtggcggcct
gaacaaccagaatactcaggtttgatacaacaacagattcagcgcaccgaatacaccgca
ttgcaaacagcattgccattttatcgttttcaagaatacaccagtttcagcggtatcagc
cgccatatcagccatcttgccatggatgaattggtgcctgaaatcgatgtgggtgaatta
caagacgatcaagtggtattggatgaagagacagtcttgcctgaagcgcacgaatttgat
atttttcatttccagcgcggtacagatgcaggcttatgtttacatgctttattagaacac
accgatttccaacaatcggccatcagtcaaagcgatgtatacgcaccgattttagagcgt
tatcacattgatgaatcatggcagcctgcgctctatgctatgattgatgccactcgtttg
gcacatttggatgcagatgtttgtttggctgatttacctccagagcaatgtttggcggag
atgggttttgtgttgaatgtcaatcaatttaccgcagccgacatccaacaatgtttgtta
gaatcgcatttaccatcggcaatcaaacaggccgctcaaggcttgcattttcgtgatgtg
atgggttttttaaatggttttatcgacttggtttgcgtgaacttagatggcaaagtgtat
gtcatcgattacaagtctaatcatttgggtatgttgcccaaagattaccataccaatgct
ttgaatcttgccatcaatgaccaccattattatttgcaagctttgatttatgccattgct
gtcggtcgttatttgcgcagtcgccactttgattttgacgccattcacatacgttatttg
tttttgcgtggtttacagcctgcgagcgaacaaggtgtatggcgttgggacatcggcata
gatgagttagataaaattgacgctgtacttgcttcatga
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