Vitreoscilla sp. C1: ADP71_16010
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Entry
ADP71_16010 CDS
T05336
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vit
Vitreoscilla sp. C1
Pathway
vit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADP71_16010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vit03021
]
ADP71_16010
03019 Messenger RNA biogenesis [BR:
vit03019
]
ADP71_16010
Transcription machinery [BR:
vit03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ADP71_16010
Messenger RNA biogenesis [BR:
vit03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ADP71_16010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_25
AAA
NACHT
AAA_22
Mor
Motif
Other DBs
NCBI-ProteinID:
AUZ05159
LinkDB
All DBs
Position
complement(1268617..1269879)
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AA seq
420 aa
AA seq
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MHVSELQKQHVSELLTLAEQNGIENANRLRKQDLVFAIVRALVKKGESFTGEGTLEILPD
GFGFLRSRDTSYLAGPDDIYVSPSQIRRFNLHTGDTIEGSVRTPKDGERYFALVKLDKIN
GDDPEKCKHKILFENLTPLFPTRQFKLERDGKTKEDKNVTSRAIDLVAPIGFGQRALLVA
PPKTGKTVMLQNIATAITTNYPDVELIVLLIDERPEEVTEMTRSVRGEVVSSTFDEPAQR
HVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPASGKILTGGVDANALHRPK
RFFGAARNLEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMELHLERRLAEKRVFPAI
SLNRSGTRREELLVPNDQLQRMWLLRKFLHPMDDVEAMEFLQDKIKSSKNNADFFDQMKR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtttccgaactacaaaaacaacacgtttctgaattattgactttggccgaacaa
aatggcattgaaaatgccaaccgcttgcgcaaacaagatttggtatttgccattgtccgc
gctttggtcaaaaaaggcgaaagcttcacaggcgaaggcactttggaaattttaccagat
ggctttggcttcttacgcagtcgagatacgtcttatttggcaggtccggacgacatttat
gtcagcccaagtcaaatccgccgtttcaatttgcacacaggtgacactatcgaaggcagt
gtccgcacacctaaagacggtgaacgctattttgctttggtgaaattggacaaaatcaat
ggcgatgaccctgaaaaatgcaaacacaaaattttgtttgaaaacttaacgccgttgttc
ccaacgcgccaattcaaattagagcgcgatggtaaaaccaaagaggacaaaaacgtcact
agccgcgccattgatttggttgcgcccattggttttggccaacgtgctttgttggtagcc
ccgcctaaaacaggtaaaactgtgatgttgcaaaacatcgccactgccatcacgaccaat
tatcctgatgtggaattgattgtattgttgattgatgagcgtcctgaagaagtgactgaa
atgacccgctctgtgcgtggtgaagtggtatcgtcaacttttgatgaacctgcccagcgt
catgtacaagtggctgagatggtgattgaaaaggccaagcgtttggttgaacatggcaaa
gatgtggtgattttattggattcgattacccgtttggcacgtgcttacaatactgtggta
ccagcatcgggcaaaattttgaccggtggtgtggatgccaatgccttgcaccgcccaaaa
cgtttctttggtgcggcgcgtaatttggaagaaggtggttctttgaccatcatcgccacc
gctttggtcgatacaggcagccgcatggacgatgtgatttacgaagaattcaaaggcacg
ggcaatatggaattgcatttggaacgtcgtttggccgaaaaacgcgtcttcccagccatc
agcttgaaccgctcaggcacgcgtcgtgaagaattgttggtgccaaacgatcaattgcaa
cgcatgtggttgttgcgcaaattcttgcatccgatggacgatgtggaagcgatggaattt
ttgcaagacaaaatcaaatcatcgaaaaacaatgctgatttctttgatcaaatgaagcgt
taa
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