Vibrio sp. VB16: IUZ65_003895
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Entry
IUZ65_003895 CDS
T11571
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
viv Vibrio sp. VB16
Pathway
viv03030
DNA replication
viv03430
Mismatch repair
viv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
viv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IUZ65_003895 (dnaE)
03430 Mismatch repair
IUZ65_003895 (dnaE)
03440 Homologous recombination
IUZ65_003895 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
viv03032
]
IUZ65_003895 (dnaE)
03400 DNA repair and recombination proteins [BR:
viv03400
]
IUZ65_003895 (dnaE)
Enzymes [BR:
viv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IUZ65_003895 (dnaE)
DNA replication proteins [BR:
viv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IUZ65_003895 (dnaE)
DNA repair and recombination proteins [BR:
viv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IUZ65_003895 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
UGA55506
LinkDB
All DBs
Position
1:802743..806222
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDYSMVDGLSKVPPLVKKVAELGMPAMALTDFTNLCGLVKFYNTAHAC
GIKPIIGADFAMQSDLFGDELTQITVIAKDNKGYNNLTLLISEAYQRGHVQHQPVIDKDW
LVNHKEGLIILSGGKNGEIGRALLKGNQPLVDRCVEFYNTHFPDHFYLELSRTGRADEES
YLHFSLELADNVGLPVVATNEVVFLHTEQFDAHEIRVAIHDGFTLVDPRRPKNYSAQQYL
RTEDEMCALFSDIPEALENSVEIAKRCNATVRLGEIFLPNFPTEGMEIEDYLVKKSEEGL
EDRLEFLFPDEQVRLDKRADYDERLKIELKVINQMGFPGYFLIVMEFIQWSKDNDVPVGP
GRGSGAGSLVAYALSITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDKRDQVIDHVAE
IYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFKAEPQ
LPEIYAADEDVKELIDKCRILEGVTRNAGKHAGGVVISPTTITDFAPIYCDADGNFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLKKEGKDPVRIESIPLEDPRSFRKL
QDSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDETWQHDSLQETLEPTYGIILYQEQVMQIAQILAGYTLGGADMLRRAMGKKKPEEM
AKQRSIFEQGAIDNGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKIIGLVDECNRMKLKVLPPDINAGDYRFNVDESGAVVYGIGAIKG
VGEGPIENIIEARNSGGHFKDLFDFCARIDLKKANKRVIEKLIQAGALDRLGPHRAAMMA
SVNAAVKAAGQYHQAESFGQSDMFGVLTDAPEAVEQAYAQVPEWPEKIWLEGERETLGLY
LTGHPVNAYLKELAKYTSCRLKDATVTRRDQSVTLSGLVIAARVMTTKRGSRIGLMTLDD
RSGRIEVMMFSDVLDRYAELLEKDRILVISGQVSFDDFNGGLKMSAREVMDIGEAREKYA
RGLSVSIMQSQINAQFFERFSAILEPHKAGTVPVNVYYQREDARAKLALGTEWRVTPNDT
LIDELKQLLGKKQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatccaaagtttatacacctaagagtgcacagtgattattccatggttgatgga
ctgtctaaagtcccgccattggtgaaaaaggttgccgagcttggaatgccagcaatggcg
ctcactgactttactaacttatgcgggttagtgaaattttacaatactgcgcacgcctgc
ggaataaagccaataattggtgcagattttgcgatgcagtccgatctctttggtgatgag
ttaacgcagataacggttattgctaaagataataagggatataacaaccttacattgctt
atatctgaggcatatcaaagaggtcacgtacaacatcaacctgttattgataaagattgg
ttagtgaaccataaagaagggctgatcattctatccggcggtaaaaatggcgaaataggt
agagcgttactcaaaggtaatcaacccttggtcgatcgctgtgttgagttttacaatacc
cattttcccgatcatttttatttagaactgtcgcgaacgggaagagcagacgaagagagt
tatttacatttttcgctcgaattagctgataatgtaggactgccagtggtcgcgacgaat
gaagttgtgttcctgcataccgagcagtttgatgcacatgaaattcgtgtcgcgatacat
gatggatttactctggtcgatccgcgaagacctaaaaattacagtgctcaacaatatttg
cgtaccgaagatgagatgtgtgctctattttcagatatcccagaagcccttgaaaatagt
gtcgagattgcgaaacgatgtaatgctacggttcgattgggtgaaattttcttgccaaat
ttcccaacagaagggatggaaattgaagattatctggttaaaaaatcagaagaaggtcta
gaagaccgccttgagtttttgttccctgacgaacaagttagattggataaacgagcagat
tatgacgaacgtcttaaaatagaacttaaagtgattaaccagatgggatttcctggttac
ttcttgatagttatggagtttattcagtggtcgaaagataacgatgtgcccgttggccct
ggccgagggtctggtgctggttctttggtagcttatgcgctaagtattacggatttagat
ccattagaatacgatctcctgtttgaacgcttcttaaatcccgaacgtgtatctatgccc
gatttcgatatcgatttttgcatggataaacgagatcaagtgattgatcatgtggcagaa
atatatgggcgtgatgccgtatcacagattattacctttggaaccatggccgctaaagcg
gtaatacgggatgttggtagagtccttggccacccatatggctttgttgaccgcatctct
aagttaatcccccccgatcccggtatgacccttgaaaaggcatttaaagcagagcctcag
cttccagaaatttatgcggctgatgaagatgtaaaagaacttattgataagtgccgaatc
ttagaaggcgtaacacgtaacgcgggtaaacacgccggtggtgttgttatttctcccact
acgattacggattttgcgccaatttattgtgatgctgatgggaattttcctgttactcaa
tttgataaaaatgacgtagaaaccgctggattggtgaagtttgactttcttggtttgcgt
acactgaccattatcgattgggcgcttggcctaattaatccccgtttgaaaaaagaaggg
aaagatccggttcgaatcgaatcgattccacttgaagaccctcgttcatttagaaagcta
caagattctgaaaccactgccgtattccagttagaatcccgcggtatgaaagagcttatc
aaacgacttcaaccagactgctttgaagatattatcgcattggtggcgctttttcgtccg
ggaccattacagtccggaatggtcgataactttattgaccgtaagcacggtcgtgaagcg
gtatcttacccagatgaaacatggcagcatgattcgcttcaagagacattagaaccgacc
tacggcattatcttgtatcaagaacaggtaatgcagattgcgcagatcctcgcgggatat
acgctaggcggtgccgatatgttgcggcgtgcgatgggtaagaaaaaaccggaagagatg
gcaaagcagcgttcgatatttgaacaaggggctattgataacggtgtcgacggtgaattg
tcgatgaaaatatttgaccttgtagaaaaatttgcagggtatggatttaataaatcgcat
tcagcggcttatgcactcgtttcttatcaaaccctgtggcttaaaacccattatcctgct
gagtttatggctgcggttatgacggctgatatggataacaccgaaaagatcattgggttg
gtggacgaatgtaaccgaatgaagttaaaggttttacccccagatattaatgctggagat
tatcgattcaatgtggatgaatctggtgcggttgtttacggtatcggagcgattaaaggt
gttggtgaagggcccattgaaaatatcattgaagcgagaaatagcggaggtcatttcaag
gatctcttcgatttctgtgctcgtatagacttgaaaaaagccaacaaacgcgtcatcgaa
aaattaatccaagctggtgcgttggaccgtttagggccgcatagggcagccatgatggcg
tcagtcaatgcggcagttaaagcagctggtcaatatcatcaagctgaatcatttggtcag
tctgatatgtttggtgtgttaacggatgcaccagaagcggtagagcaagcttacgcacag
gtgcctgaatggccagaaaaaatatggttggaaggagaacgtgaaaccttagggctttat
ttgaccggacatccagttaatgcatatttaaaggaacttgcgaagtacactagttgtcga
ctaaaagatgcaacggtaacaaggcgtgatcaaagtgtgactttgtctggcttagttatt
gcggcaagagtgatgacaactaagcgtggatctcgtattggtcttatgacattagatgac
agatcgggtcgaattgaggtaatgatgttctccgatgtgttggataggtacgcagaatta
ctagaaaaagacagaatattagtgatttctggacaggtcagctttgatgacttcaatggt
ggccttaaaatgtctgcgcgagaagtgatggatattggtgaagcccgtgagaaatatgct
cgtggattatcggtgtcgatcatgcagtcgcaaataaatgctcagttttttgaacgattt
agtgcaatattggagccacacaaagcgggaaccgttccagtaaatgtgtattatcaaagg
gaagatgctagagcaaagctcgcattgggaactgaatggcgagtaacgccaaacgacaca
ttgatagacgaattaaaacagttacttgggaaaaaacaagtagaactcgaatttaactaa
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