Vibrio sp. VB16: IUZ65_007125
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Entry
IUZ65_007125 CDS
T11571
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
viv Vibrio sp. VB16
Brite
KEGG Orthology (KO) [BR:
viv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
viv03019
]
IUZ65_007125 (hrpA)
Enzymes [BR:
viv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IUZ65_007125 (hrpA)
Messenger RNA biogenesis [BR:
viv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IUZ65_007125 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
ResIII
T2SSE
WHD_HA2
ABC_tran
nSTAND3
NACHT
nSTAND_NTPase5
AAA_30
TsaE
SLFN-g3_helicase
DUF2939
NTPase_1
PhoH
AAA_23
Zeta_toxin
DUF6893
Motif
Other DBs
NCBI-ProteinID:
UGA56112
LinkDB
All DBs
Position
1:1511275..1515210
Genome browser
AA seq
1311 aa
AA seq
DB search
MTSSQSKSQSHGVENEKNRHNSAAQLRNALKDCLIKDRFRLSKRIHGASRIKNAHSMNAV
FDEITLDIAKSMMKVQQRQSNSATIDFPEQLPVSQKRADIAKAIAENQVVIVAGETGSGK
TTQLPKICSELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGEFVGYKVRFNDQISD
NTQIKLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLRELLPRRPDLKVI
ITSATIDPERFSKHFFNAPIIEVSGRTFPVETRYRPLNSDDADDRDQLEGIFEAVDELVD
EGLGDILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSSGEQNKIFQPHAGRRIVLA
TNVAETSLTVPGIKCVIDPGTARISRYSYRTKVQRLPIEAISQASANQRKGRCGRVEEGI
CIRLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNILDGVR
LLEELGAMNASSSDTKKQLTAIGRQVARLPIDPRLARMVIEAPLFGCLKEVMIIASALSI
QDPRERPSDNKQSSDEKHRRFFDKESDFVTLINLWNYIQEKQKELSSNQFRKQCKQDYLN
YLRIREWQDVYFQLHQSMREMDTKLNDKPGDYQGIHSALLVGLLSHIGVKDQEKNEYQGA
RNARFHIFPASGLFKKQPKWVISAELVETSKLWGRVVAKIQPEWIEPLAKHLIKRTYSEP
HWSKKQGAVMASEKVMLYGIPIVPKRLVNYDSIDPVVCREIFIRSALVEGEWETRHAFFK
NNRKLLLEVEELEHKSRRRDILVDDDELFEFYDQRVETDVVSARHFDSWWKKTSKTNPEL
LNFEREMLFRGDASHITDLDYPNFWHHNNIKLKLSYQFEPGDDTDGVTVHIPLPILNQID
NSGYDWQIPGLRKELVISLIKSLPKTLRRNFVPAPNYADAFLARVTPFEAPLLDSLEKEL
RRITGVEVLRDDWKLDQIPEHLKITFRAVDQHRRKLKEHKDLHELKESLKEQVQKTLSQV
ADDDIEQQGLHTWSFGELPKVYQQKRGGFEVKAFPAIVDGKDSVEIKLFETEHEQESAMK
AGQRRLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVMDLIDDCIACGIDKLIEKKGGL
VWDNDQFELQKEFVRAELGDTVVDIAKQVETILTTAFNINKKLKGKIDFTMAFALSDIKS
QVEGLIFKGFATECGWKKLPDILRYLKAIERRMEKLPIDPNRDRLQMLKVEAVYNDYREL
LNKIPKGVVIPDNVKEIRWMLEELRVSFFAQQLGTPYPVSDKRIKNAIGSC
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
ttgacatcgtcacaatcgaaatctcaatcgcacggcgttgagaacgaaaaaaacagacac
aacagtgcagcgcaactaagaaatgcactgaaagattgcttgataaaggatagatttaga
ttatctaagcgtattcatggtgctagccgcattaaaaacgcacattcaatgaatgcggtt
tttgatgagataacactcgatattgctaagtctatgatgaaggtgcaacagcgtcagtca
aacagtgcaaccatcgattttccagaacaactaccggttagtcaaaaaagagcagatata
gcgaaagccatcgctgagaatcaggttgttattgtcgctggggaaacaggttcgggtaaa
accacacagcttccaaagatatgcagtgagttaggccgggggaaatacggtttaataggt
catacgcaaccgcgtcgtttggcggctcgctcagttgccaaccgaatagccgaagagatg
gaaaccgagctcggtgaatttgttggttataaagttagatttaatgatcaaatttccgac
aatacccagataaaattaatgactgacggtatcttgttagcggaaattcagcatgatcga
tttcttaatcaatacgacactattattatcgatgaggcgcatgaacgcagtcttaatatc
gattttatactcggttatcttcgagagttgctcccacggcgccccgacttaaaagtcatt
atcacgtcagcaaccatcgacccagaacgcttttctaaacacttttttaatgcaccgatc
attgaagtgtcaggtcgaactttccctgtggaaactcgatatcgaccgctaaatagcgat
gacgcggatgatcgagaccagcttgagggcatttttgaagcggtagatgaactcgtagac
gaaggtttaggggatattcttatcttcatgaacggtgaacgagagataagggataccgct
gatgctttatcgaaaagaaacctccgtgatacggaaatcgtacctctctatgcaaggcta
tcctctggcgagcaaaataagatatttcaacctcatgcggggcgaaggattgttcttgct
accaacgtggcagagacttctttaaccgtaccgggtataaaatgtgttatcgaccctggt
acggcacgtatcagtcgatatagctacagaacaaaggttcaacgtttaccgatagaagcc
atttctcaagcaagtgccaatcaacgtaaaggacgttgcgggcgtgtagaggaagggatc
tgtattcgactgtactcagaagaagatttcgaatcccgtcccgagtttaccgacccagag
attctgcgtactaaccttgcttccgttatcttgcaaatgaccgctttagggctaggtgat
attcaagcattcccgtttgtggaagcaccggataaacgcaatatattggacggtgtgcgt
ctgcttgaagagctaggcgcgatgaacgcaagcagcagtgataccaaaaaacagttaacc
gcaataggtcgccaagtcgcccgccttcctattgaccctcgtttagcgcgaatggtgata
gaagcgcccctgtttggttgcctgaaagaggtgatgattatcgcttctgcgctctcaatc
caagacccaagagagcgtccatctgacaataaacagtcgtcagatgaaaaacatcgtcgt
ttctttgacaaagagtctgattttgtcacgttgatcaacctgtggaattatattcaggag
aagcagaaagaactctcttcgaatcaattcagaaagcagtgtaaacaagactatttaaac
tatcttcgaatccgagagtggcaagatgtttattttcagcttcatcaatccatgcgggaa
atggataccaaactaaatgacaaaccgggcgattatcaggggatccatagtgcattgctt
gttggtttgctttctcatattggtgtgaaggatcaggaaaagaatgagtatcaaggtgct
cgtaatgcgcgattccatattttccctgcttctggtttatttaagaaacagccaaagtgg
gtgatatcggcagagctggttgagacttctaagctgtggggacgggttgttgcgaaaatc
caacctgaatggatagagcccttagcaaaacacctgataaagcgcacctatagtgaaccg
cattggtccaaaaaacaaggtgctgtaatggcatcggaaaaagtgatgctttatggcatt
cctatcgtgcctaaaaggctggtgaactacgattctatcgacccagtagtatgtagagag
atatttatacgtagcgctttagtcgaaggtgaatgggaaaccagacatgcctttttcaaa
aacaaccgcaagttgttactcgaagttgaagagctggaacacaaatctcgtcgtagagat
atcctagttgatgatgacgaactgtttgaattctatgaccaacgcgttgaaacggatgtc
gtatctgcaaggcattttgacagttggtggaaaaaaaccagcaaaacgaatccagaatta
cttaactttgaaagagagatgttgtttagaggtgatgctagccacataaccgatctggat
tacccgaatttttggcatcacaacaacatcaagttgaaactgagttatcaatttgaaccg
ggtgacgatacagatggcgttacagtgcatataccgttgcctatactcaaccaaatcgac
aactccggatatgattggcaaattcccggcttacgaaaagaattggtcattagtttaatc
aaatcgctgcctaaaacgctgagacgaaattttgtgccagcgccaaactacgcggatgca
tttttggctcgtgtcacgccgtttgaagccccgttactggactctctagaaaaagagtta
cgccgtattaccggtgtagaagtattaagagatgattggaagttggatcaaattccggag
catttaaagataacgtttcgtgcagtagaccagcatcgacgtaaactgaaagaacataag
gatttgcacgaacttaaagagagccttaaagagcaagtgcagaagacgctttcacaggtt
gctgatgacgatattgaacagcaaggtttgcatacatggagttttggtgagcttccgaag
gtgtatcagcaaaaaagaggggggttcgaagtaaaagcctttcctgcaattgtcgatggc
aaagatagtgtagaaattaagctttttgaaacagaacatgaacaagagtctgcaatgaaa
gcaggccagcgacgattgatactgttaaacgtaccatcgcctattaagtatttgcacgca
aacctcccgaataaatccaagctagggttgtatttcaatccctacggtaaagtaatggat
ttgattgatgactgtattgcttgtggaatagacaagcttatcgagaaaaaaggtgggctg
gtttgggataacgatcaatttgagcttcagaaagagtttgttcgcgctgagctcggggat
acggttgttgatattgcgaaacaagttgaaacaatcttgacgacagcatttaatatcaat
aagaagctgaaaggtaagattgattttacgatggcgtttgcattatcggacataaagtct
caggttgaagggttgattttcaaagggtttgccacagaatgtgggtggaaaaaactgccg
gatattcttcgttacttaaaagcgattgagagacgaatggaaaagctgcctattgaccct
aatcgagatcgtctgcagatgttaaaagtagaagcggtttataatgattatcgtgaactt
ctcaataaaataccgaaaggtgtggtgattcctgataatgttaaagagatccgttggatg
ctggaagagttacgggtgagtttcttcgctcagcaactcggtacaccttatcctgtgtct
gataagagaataaaaaatgcgatagggtcatgttag
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