Vibrio sp. VB16: IUZ65_013420
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Entry
IUZ65_013420 CDS
T11571
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
viv Vibrio sp. VB16
Pathway
viv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
viv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IUZ65_013420 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
viv03019
]
IUZ65_013420 (pnp)
03016 Transfer RNA biogenesis [BR:
viv03016
]
IUZ65_013420 (pnp)
Enzymes [BR:
viv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
IUZ65_013420 (pnp)
Messenger RNA biogenesis [BR:
viv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IUZ65_013420 (pnp)
Transfer RNA biogenesis [BR:
viv03016
]
Prokaryotic type
tRNA degradation factors
IUZ65_013420 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
KH-I_KHDC4-BBP
KH_SLS1_2
DUF3016
Motif
Other DBs
NCBI-ProteinID:
UGA54253
LinkDB
All DBs
Position
1:complement(2943319..2945442)
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AA seq
707 aa
AA seq
DB search
MFANPIVKTFQYGNHTVTLETGVIARQATSAVMVTMDDTAVLVSVVGKKVAVEGQSFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPDEFKNEVQVIATVVS
VNPDVQPDIVTMIGTSAALSISGIPFNGPIGSARVGHIDGQLVLNPSNTELETSKLDLVV
AGTDGAVLMVESEADNLSEEEMLSAVVFGHDQQQVVVSAIKEFAAEVATPSWDWVAPTVD
ADLKAKIAELAEVRLTEAYQITEKMARYEQVGEIKSDVVTALSAENEELDVNEVKKMLGS
LEKNVVRGRIIAGSPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ
RDAQIIDELTGEKKSHFLLHYNFPPFCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSAE
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNEGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGARDDISEFAPRIHQLKISTDKIRDVIGKGGAVIRALCEETGTTIEIEDDGTVKIAA
TSGEQAEDAINRIKELTAEVEVGTIYIGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVTDYLSEGQEVKVKVLEIDRQGRVRLSMKEAQDKPAEEAQAPEAE
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgttcgcgaatcctatcgtaaaaacattccagtatggtaaccatactgttactttagaa
acaggcgtaatagcacgtcaagcaacgtctgctgttatggtaacaatggacgatacagca
gtattagtctctgttgttggtaaaaaagtagcggttgaaggccaaagcttcttcccgctt
actgttaactaccaagagcgtacatacgccgctggtaaaatcccaggtggtttcttcaag
cgtgaaggtcgcccatcagaaggcgagacattgacagcgcgtctaatcgaccgtccaatt
cgtcctctattcccagatgaattcaaaaacgaagttcaagttatcgcaacggttgtatct
gtaaatccagatgttcaacctgatatcgtaacaatgatcggtacctcagccgctctttct
atctctggtattccatttaatggccctatcggttctgctcgtgttggtcatatcgatggt
caacttgtacttaacccaagcaataccgaactagaaacatctaagttggatcttgttgtt
gctggtactgatggtgccgtgcttatggttgaatcagaagcagataacctatcagaagaa
gagatgctatctgcggtagtatttggtcatgatcaacaacaagttgttgtctctgcaata
aaagagtttgctgcagaagtcgcaacaccttcatgggattgggttgcaccaacagtagac
gcagatcttaaagcgaaaattgctgagctagctgaagttcgtttgactgaagcttaccaa
atcacagaaaaaatggctcgttatgagcaagttggcgaaattaagtcagacgttgttact
gcgctttctgctgaaaatgaagagcttgacgtgaacgaagtgaaaaaaatgcttggttca
ttagagaaaaacgtagtacgtggtcgcatcattgcgggtagccctcgtattgatggacgt
gaaaaagatatggttcgtgcacttgatgtacgtactggcgttcttcctcgtactcacggt
tcttcactatttactcgtggcgaaactcaggcattggtaaccgcgactcttggtacacaa
cgtgacgctcaaatcattgatgaactaactggtgagaagaagtcgcacttccttctacac
tataacttccctccattctgtgtaggtgaaactggttttgttggttcacctaagcgtcgt
gaaattggtcacggtaagcttgcaaaacgcggtatccaagcggtaatgccttcagctgaa
gaattcccgtacacggttcgtgttgtatctgaaatcacagaatctaacggttcttcttca
atggcttcagtatgtggtacatcactagctcttatggatgctggtgttccaattaaagct
tctgttgcgggtatcgcaatgggtctagttaaagaaggcgacgactttgttgttctctct
gacatccttggtgatgaagatcaccttggtgacatggactttaaagtagcgggtactaat
gaaggtatcaccgcacttcagatggatatcaagattgaaggtatcactaaagagatcatg
caaattgcgcttaaccaagcacaaggcgctcgtaagcacatcctttctgtaatggatgaa
gctatctctggtgctcgtgatgatatctctgagtttgcacctcgtatccaccagttgaag
attagcactgacaaaattcgtgacgttatcggtaaaggtggcgctgttattcgtgcgctt
tgtgaagaaacgggtacaactatcgaaatagaagatgacggtacagttaaaattgctgca
acgtctggtgagcaagctgaagatgcgattaaccgtattaaagagctaaccgctgaagtt
gaagttggcactatttacattggtaaagttgctcgtttggctgatttcggtgcgtttgtt
actattcttccaggtaaagacggtttagtacacatttctcaaatcgctgacaagcgtgtt
gagaaggtgacggattacctaagtgaaggacaagaagttaaagttaaagtactagaaatt
gaccgccaaggtcgtgtacgtctaagtatgaaagaagcacaagataaaccagctgaagaa
gcacaagctccagaagctgaataa
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