Vibrio sp. VB16: IUZ65_015805
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Entry
IUZ65_015805 CDS
T11571
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
viv Vibrio sp. VB16
Pathway
viv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
viv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IUZ65_015805 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
viv03021
]
IUZ65_015805 (rpoB)
03400 DNA repair and recombination proteins [BR:
viv03400
]
IUZ65_015805 (rpoB)
Enzymes [BR:
viv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IUZ65_015805 (rpoB)
Transcription machinery [BR:
viv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IUZ65_015805 (rpoB)
DNA repair and recombination proteins [BR:
viv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IUZ65_015805 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
DUF7073
Motif
Other DBs
NCBI-ProteinID:
UGA54681
LinkDB
All DBs
Position
1:complement(3471394..3475422)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGTRPQVLDIPYLLSIQLDSFDKFIEQDPEGQHGLEAAFRSVFPIQ
SYNGNSELQYVSYRLGEPVFDVKECQIRGVTYSKPLRVKLRLVVFDRDAPAGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDPKDNLYVRIDRRRKLPASIILRALQKTTEEILDIFFDKVNFEVKDQTLMME
LVPERLRGETANFDIEANGKTYIETGRRVTARHIRNLEKDGVESIEVPVEYIVGKVSSKD
YINEDTGEIIVAANQEISLEALANLSQAGHKHLQVLFTNDLDHGPFMSDTLRVDSTVDRI
SALVEIYRMMRPGEPPTKDAAEALFQSLFFAVERYDLSTVGRMKFNSSIGREDAGEQGIL
DETDIIEVMKKLIGIRNGKGVVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDAIMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFARCNDFGFLETPYRRVVDGIVT
SDVDYLSAIEEGQFIIAQANSTLTETNAFGEELVTARQKGESGLHPRDQVNYMDVATNQV
VSVAASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGIERNVAVDSGVTAVAKR
GGTVQSVDASRIVVKVNEIELVPGEAGIDIYNLTKYTRSNQNTCINQRPTVLPGEPVAKG
DVIADGPSTDLGELALGQNIRLAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCVA
RDTKLGSEEITADIPNVGESALSKLDESGIVYIGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDTSLRVPNSVSGTIIDVQVFTRDGVEKDKRALEIEQMQLKEAKKDL
TEEFEILEGGLLARVRAVLVSGGYSEAKLDSIHRKQWLEQTLEDDELQSLLEQLAEQWDE
LKADFDKKFENKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PVEDMPYDEKGQPVDIVLNPLGVPSRMNIGQILEVHMGLAAKGIGDKINQMLKEQQELHQ
FRNFLQKVYDLGETRQTVDIAALSDDEVRTLVQNLRGGLPIATPVFDGAPESSIKELLKL
GDLPESGQLRLFDGRTGDEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHSMEPGMPE
SFNVLLKEIRSLGINIELEDEE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgagaaaaagcgcatccgtaaggattttggtactcgtccacaa
gttttggacattccatatttgctatcaatccagcttgattccttcgataaatttatcgaa
caggatcctgaaggacaacacggtcttgaagccgcttttcgttctgtatttcctattcag
agctataacggcaattctgagctgcaatacgttagctaccgtcttggtgaaccagttttt
gatgttaaagaatgtcaaattcgtggtgtaacttattcaaaaccattgcgcgtaaaattg
cgccttgttgtgtttgatagagatgcaccagcaggtaccgtaaaagacattaaagaacaa
gaagtttacatgggtgagatcccattaatgactgataatggtacctttgtaattaatggt
actgagagggttatcgtatcccagctgcatcgaagcccaggtgtgttcttcgacagcgat
aagggtaaaacccactcatcaggtaaagttttatataacgcacgtgttattccttaccgt
ggctcatggttagactttgagttcgatcctaaggataatttatacgtacgtatcgaccgt
cgtcgtaaactgcctgcttctatcattcttcgtgcactgcaaaagacgacagaagagatc
cttgatatcttcttcgacaaagtgaacttcgaagtgaaagaccaaactcttatgatggag
ttggtccctgaacgcctgcgtggcgagacggcaaactttgatatagaagcgaatggcaag
acttacatcgaaacaggtcgccgcgttacggctcgtcacatccgcaatcttgaaaaagat
ggcgttgagtccatcgaagtaccagtagagtacatcgttggtaaagtttcttctaaagat
tacattaatgaagacactggcgagattatcgttgcggcgaaccaagaaatcagcttagaa
gcgttagctaacctttctcaagctggtcacaaacatttacaggttctgttcaccaatgat
ctagaccacggtccattcatgtccgacacattgcgtgtcgatagcacggttgaccgtatt
tctgcgctagttgaaatctaccgtatgatgcgtcctggtgagccaccaacaaaagatgcg
gcagaagctttattccaaagcttattcttcgctgtagaacgttatgatctatcgactgtt
ggtcgtatgaagtttaacagttcgattggtcgtgaagatgctggcgagcaaggtatcctt
gacgaaaccgacatcatcgaagtaatgaagaagcttataggcattcgtaacggtaaaggt
gtagtggacgatatcgaccacttaggaaaccgtcgtatacgaagcgtaggcgaaatggct
gaaaaccaattccgtgttggtttagtacgtgttgagcgtgcagtgaaagaacgtttaagc
cttggtgaccttgatgcaatcatgccgcaagaccttatcaacgctaagcctatttctgca
gctgttaaagaattctttggctcttcacagctttcacagtttatggatcagaacaacccg
ttatcagaagtgacgcataaacgtcgtatctctgcattgggtcctggtggtcttactcgt
gaacgcgcaggttttgaagtacgtgatgttcacgtaactcactacggtcgcttatgtccg
attgaaacgcctgaaggtccaaacatcggtcttatcaactcgttgtctgcgtttgcacgc
tgtaacgattttggtttcctagaaaccccttaccgtcgcgttgttgatggtattgtgact
tccgatgttgattacttgtcagctattgaagaagggcaattcatcatcgctcaggcgaac
tctacgctaactgaaactaatgccttcggagaagaattagttacggcgcgtcagaaaggt
gaatctggtcttcatccacgtgaccaagttaactacatggacgttgcaaccaaccaggtt
gtatctgtcgctgcatcgcttatcccgttcctagaacacgatgatgcgaaccgtgcccta
atgggtgcgaacatgcaacgtcaggcggttccaacattacgcgcagataagcctcttgta
ggtactggtattgagcgtaacgtagcggttgactccggtgttactgcggtagcaaaacgt
ggcggtactgttcagtcagtagacgcatctcgtatcgtggttaaggttaatgaaattgaa
ttggtacctggcgaagccggtatcgacatctataacctaactaaatacacgcgttctaac
cagaatacttgtattaaccaacgcccaaccgtgctacctggtgaaccagtagcaaaaggt
gacgtaattgctgatggtccttcaaccgaccttggtgaattggcgcttggtcaaaatatt
cgcttggcattcatgccttggaacggttataactttgaggattcaatcctcgtttctgag
cgtgtcgttcaggaagaccgtttcacgactatccacattcaagagctatcttgtgtggca
cgtgatactaagctgggatctgaagagatcactgcggatattccaaacgtaggtgaatct
gctctgtctaaactagacgagtcaggtatcgtttatattggtgctgaagtgaagggtggt
gacatcctagttggtaaagtgacacctaaaggtgaaactcagctaactcctgaagagaaa
ctcttacgagctatctttggtgaaaaagcatccgatgttaaagatacgtcactacgtgta
ccaaactctgtttcaggtacgattatcgatgttcaagtcttcactcgtgacggcgttgag
aaagataagcgtgcactagaaattgaacaaatgcagcttaaagaagcgaagaaagacctt
actgaagagtttgaaattcttgaaggtggtctacttgctcgtgttagagctgtacttgtt
tcaggcggttactctgaagctaagctagattctattcaccgtaaacagtggctagaacaa
acactagaagatgatgagcttcaatcattgcttgagcaacttgctgagcagtgggacgag
cttaaagcagacttcgataagaagtttgaaaacaaacgtcgtaagattacacaaggtgat
gatttagcacctggtgttcttaagattgttaaagtttatctagcggttaagcgtcgtatc
caacctggtgataagatggccggtcgtcacggtaacaagggtgtaatctctaagattaac
cctgttgaagacatgccttacgatgaaaaaggtcagcctgttgacatcgtacttaaccca
ctgggtgtaccgtctcgtatgaacattggtcagatcttagaagttcatatgggtctagct
gcgaaaggtatcggtgacaagatcaaccaaatgctgaaggaacaacaagaactgcatcag
ttccgcaacttcctgcaaaaggtttatgatcttggtgaaacgcgtcagacagtagacatt
gcggctctatctgatgatgaagttcgtacattggtgcaaaacctacgtggtggtttacct
attgcgactccggtatttgatggtgctccagaatcttcaatcaaagagctgttgaaattg
ggtgacttaccagaatctggtcagttgcgtttatttgatggccgtactggtgacgaattt
gagcgtcctgtaaccgtaggttacatgtatatgcttaaactgaaccaccttgttgatgac
aagatgcacgcacgttctactggttcttacagcctcgtaactcagcaaccacttggtggt
aaagctcagttcggtggacagcgtttcggtgagatggaagtatgggcactagaagcatac
ggtgctgcttacactctacaagaaatgttgactgttaagtccgatgacgtgaatggtcgt
actaagatgtataagaacatcgtagacggaaaccatagcatggaacctggtatgccagaa
tcgttcaacgtattgttgaaagagattcgctcactaggtatcaacatcgagctagaagac
gaagagtaa
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