Vibrio sp. VB16: IUZ65_016250
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Entry
IUZ65_016250 CDS
T11571
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
viv Vibrio sp. VB16
Pathway
viv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
viv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IUZ65_016250 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
viv03021
]
IUZ65_016250 (rho)
03019 Messenger RNA biogenesis [BR:
viv03019
]
IUZ65_016250 (rho)
Transcription machinery [BR:
viv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
IUZ65_016250 (rho)
Messenger RNA biogenesis [BR:
viv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
IUZ65_016250 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
AAA_25
OB_RNB
S1CSD-TOTE-2
AAA
DUF5662
Motif
Other DBs
NCBI-ProteinID:
UGA54745
LinkDB
All DBs
Position
1:complement(3557428..3558687)
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AA seq
419 aa
AA seq
DB search
MNLTELKNRPIPELVKLGESLGLENLARLRKQDIIFSTLKAHAKSGEDIFGDGALEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDSIAGKIRPPKDGERYFALLKVNTVN
HDKPDNARNKILFENLTPLHANERMTMERGNGSTEDITARVLDLASPIGKGQRGLIVAPP
KAGKTMLLQNIAQSIAHNHPECILMVLLIDERPEEVTEMQRLVKGEVIASTFDEPASRHV
QVADMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALVDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDF
NRSGTRREELLTKSDELQKMWILRKIVHPMSESDAMEFLIDKLAMTKTNNEFFDAMRRQ
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaattgaagaacaggcctatacctgagcttgtcaagcttggtgaaagc
ctcggtctggaaaaccttgctcgtctacgtaaacaagacattattttctctactctcaaa
gcccacgcgaaaagcggtgaagacatttttggagatggtgcattagaaatccttcaagac
ggttttgggtttttacgtagtgcagatagttcttatcttgcgggtccagatgatatttat
gtatcaccaagccaaatacgccgttttaacttgcgtactggcgactcaatagcgggtaaa
attcgaccacctaaagatggcgaacgttattttgctttgctaaaagttaacactgtaaac
cacgataaacctgataacgcacgtaacaagattctctttgagaatttgactcctttgcat
gcaaatgaacgcatgacgatggaacgtggtaatggctcgacagaagacattaccgcacgt
gttttagacttggcttcacctatcggtaaaggccaacgaggtttgatcgttgctccgcca
aaagcgggtaaaacaatgttgctacagaacattgcgcaaagtattgctcacaatcaccct
gaatgtatattgatggttttacttatcgatgaacgccctgaagaagtgacagaaatgcaa
cgccttgtaaaaggtgaagttattgcgtcaactttcgatgaacctgcgtctcgacatgta
caagttgccgatatggtaatcgaaaaagcaaaacgtctagtagaacataaaaaagacgtg
gttattttgcttgattctattacgcgtcttgctcgtgcatacaacaccgttgttccatca
tcaggtaaagttttgacgggtggtgttgatgcgaatgcactacatcgtcctaagcgtttc
ttcggtgcagcacgtaacgttgaagaaggtggcagtttaacgattatcgctactgcattg
gttgatacgggctctaaaatggatgaagtcatctacgaagagtttaaaggtactggtaac
atggagctgcatcttaatcgtaagattgcagaaaaacgtgtattcccagctatcgacttt
aaccgttcaggtacgcgtcgtgaagaattgctaacgaagtcagatgaacttcagaagatg
tggattctacgcaagattgttcatccaatgagcgaatctgatgcgatggaattcttaatc
gacaaattggcaatgaccaaaacaaataacgagttcttcgatgcgatgcgtagacaataa
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