Vibrio sp. J383: M4S28_02670
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Entry
M4S28_02670 CDS
T11471
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
viz Vibrio sp. J383
Pathway
viz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
viz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4S28_02670 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
viz03019
]
M4S28_02670 (rnr)
03016 Transfer RNA biogenesis [BR:
viz03016
]
M4S28_02670 (rnr)
Enzymes [BR:
viz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
M4S28_02670 (rnr)
Messenger RNA biogenesis [BR:
viz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M4S28_02670 (rnr)
Transfer RNA biogenesis [BR:
viz03016
]
Prokaryotic type
tRNA degradation factors
M4S28_02670 (rnr)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
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NCBI-ProteinID:
UQV21904
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Position
1:564811..567309
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AA seq
832 aa
AA seq
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MSKNTPMSENTTATTTVDPFADRESKNYENPVPSREFIISFLTDANIPMNRNDLFEALGL
AGEEQYEGLRRRLRAMERDGQLIFTRRQCYALPEKMELIKGYVIGHKDGHGWVRPDGSVG
KDNDIVLPHHQMKTIMHGDYVLAQPTDNSKRGRREGRLVRVLEERKTPLVGRFFLEYGHS
YVVADDSRISHDIQIPTEHKGGARMGNVVVIEITDRGGRSRNMMGKVTEVLGENMAPGME
TQIAIRTHQIPQEWPEAVDKQIVNLGEHVPEEAKEGRVDLRKLPLVTIDGEDARDFDDAV
YCEAKKGGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCS
LNPQVDRLCMVCEMTISDKGKLSGYKHYEAVMNSHARLTYNKVGAILDGNEELRERYEPE
VPHLEELHKMYKVLKKTRDERGAIEFETVETKFIFNADRKIDRIEPVIRNDAHKIIEECM
ILANIASASYVEKAKEPALYRVHDTPGEERLTGFKSFLSELGLTLEGGLSPSPVDYAQLM
QQINEREDRELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIK
YLIAKEEGRQSERWTPTGGYHYTFDDMDFYGEQCSMTERRADDATREVNDWLKCEYMQDH
VGEVMDGVIANVTGFGFFVRLTELHIDGLVHISALANDYYQFDAVGQRLVGESSGNIYRL
GDSVKVKVSAVNLETRQIDFDLEDTDRQPRGKGKTAKKRAAEAMKKAKSKKRSAVKSNKP
GVPATPLVEPTKRPDGSSESSAKKKSANKTGAAKARAKKKRTASRKPKADKS
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaacacaccaatgtcagaaaacacgacagcgacaaccactgttgatcctttt
gccgaccgagagtcgaaaaattacgaaaacccagtaccaagccgagagttcattatttcg
tttctaacagacgcgaatatcccaatgaaccgtaacgatctattcgaagctttgggtttg
gctggagaggaacaatatgaagggctgcgtcgtcgtttacgtgcaatggaacgtgatgga
cagcttatctttacccgtcgtcagtgctacgcattgcctgagaagatggaattgattaaa
ggctatgtgattggtcataaagacggtcatggttgggttcgcccagacggcagtgtgggt
aaagacaatgatatcgtgttgccgcatcaccagatgaaaaccatcatgcacggtgattac
gtactggctcagcctactgacaacagtaaacgtggtcgtcgtgaaggtcgtttggttcgt
gttcttgaagagcgcaaaacgccacttgttggtcgcttcttcctagaatatggccattct
tacgtggttgctgatgattcgcgtattagtcacgacatccagatccctaccgagcataaa
ggcggtgctcgaatgggtaatgtggttgtgattgaaattacggatcgtggtggtcgttct
cgtaacatgatgggtaaagtgaccgaagttcttggtgaaaacatggctccgggtatggaa
acgcagatcgcgatccgtactcaccagatcccacaagagtggcctgaagcggtagataag
caaatcgtaaacctcggtgagcatgttcctgaagaagcaaaagaaggacgtgttgatcta
cgcaaactgccattggttaccattgatggtgaagatgcgcgtgacttcgatgatgcggtt
tactgtgaagcgaagaaaggcggaggctggcgcctgtgggtagcgattgctgacgtaagt
tactacgttcgcccagataccgcgctagacaaagaagcgattaaccgtggtaactcggta
tacttcccgtcacaagttgtgccaatgctgccagaagtcctttctaatggcctatgttca
ttgaaccctcaagtcgaccgtttatgtatggtgtgtgagatgactatctcagacaaaggt
aaactgtcgggttacaagcactacgaagcggtaatgaactctcatgcccgtctgacttac
aacaaagttggcgctatcttagatggcaatgaagaacttcgtgagcgttacgagcctgaa
gtaccacatcttgaagagcttcataagatgtacaaggtacttaagaaaacgcgtgatgaa
cgtggtgcgattgagtttgaaacggtagaaactaagtttatcttcaatgcggatcgtaag
attgaccgtattgaacccgtcatccgtaacgatgcacacaagatcatcgaagagtgtatg
attcttgcgaatatcgcatcggcgtcttacgtagaaaaagcgaaagaacctgcattgtac
cgtgttcacgatactccgggagaagagcgcttaactggctttaagagcttccttagtgag
ctaggcttaacgctggaaggtggcctgtcgccatcaccagtagactatgcacaactgatg
caacagattaatgagcgtgaagatcgtgagttaatccaaaccatgctactgcgctcgatg
aagcaagcggtatacaacgcggacaacgcaggtcactttggtttagctcttaaacgctat
gctcactttacctcgccaattcgtcgttacccagatttgctattgcaccgcgcgattaag
taccttattgcgaaggaagaaggccgtcagagtgagcgttggacgccaaccggtggttac
cactacactttcgatgatatggacttctacggcgagcagtgttcaatgactgagcgtcgt
gctgatgatgcaacgcgtgaagtgaacgactggctgaagtgtgagtacatgcaagaccat
gtcggcgaagtgatggatggcgtaattgctaacgtgactggcttcggcttctttgttcgt
ctcactgaactgcacattgatggcttggtacatatctcagcgctagcgaatgattactac
caatttgatgctgttggtcagcgtttagtcggtgaaagctcaggtaacatctaccgcttg
ggtgattcggttaaagtgaaggtttctgcggttaatctagaaactcgccaaatcgacttt
gatttagaagacaccgatcgtcagcctcgtggtaaaggtaaaacggccaagaagcgtgca
gctgaagcgatgaaaaaggcgaaaagcaagaagcgttcagcggtgaagagtaataagccg
ggtgtaccagcgacgcctttagttgaaccgactaagcgaccagacggtagctctgaaagt
tcagctaagaagaagtcagcgaataaaaccggtgctgcaaaggcgcgagctaagaaaaag
cgtaccgcaagccgtaagccaaaggctgataagtcttaa
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