Vibrio sp. J383: M4S28_08695
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Entry
M4S28_08695 CDS
T11471
Name
(GenBank) DEAD/DEAH box helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
viz Vibrio sp. J383
Pathway
viz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
viz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4S28_08695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
viz03019
]
M4S28_08695
03400 DNA repair and recombination proteins [BR:
viz03400
]
M4S28_08695
Enzymes [BR:
viz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M4S28_08695
Messenger RNA biogenesis [BR:
viz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M4S28_08695
DNA repair and recombination proteins [BR:
viz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
M4S28_08695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
UQV20034
LinkDB
All DBs
Position
1:1923661..1925790
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AA seq
709 aa
AA seq
DB search
MDKQTAEQLLKTAIADEGAQFREGQWEAIDALVNHNQKLLVVQRTGWGKSSVYFISTKIF
RDRGKGPTIIVSPLLALMRNQIESAQRLGIKAVTMNSTNIVDWEKVTKDILDDKIDCLLI
SPERLANDKFVETVLRPISDSISLMVVDEAHCISDWGHDFRPDYRRIVNILKLLPENTPV
LGTTATANDRVVDDIQTQLGNIEIQRGTLIRESLALQNIVLPDQPSRLAWLAQTIPTLAS
TGIVYVLTQRDADIVSLWLNICGIDAKPYYSGVTDPEFVNERGKLDTNAYREHLEQQLLN
DKLTVLVATTALGMGYDKPNLGFVIHFQAPGSIVAFYQQVGRAGRGIDSAVGVLMSGEED
SRIHDFFRKTAFPTEANVNRILKALDPVEYLTAEGLEKEANLPQGRIEHVLKFLAAEYPA
PVGNVGKKWHRNPVPYQMDMNKVQAITDIREAEWAEIGKYLTTENCLMLNVRNALDDHSD
EPCGKCRNCIGEDLLPTDVDTALGQKAADFLCRSEMVMEPRKQIAVSNDEAAKTFVKYDF
PRLLGDLAAEPGRILSRWGDAGWGQMVADDKHNNHFRDELVDATVEMITERWKPDAFPTW
VCCIPSLNHKTLVPDFAKRLADKLGLPFVDSLDKVLENEPQKWQQNRYHQCSNLDGAFKV
TKLGPEGSVLLVDDVVRSKWTFTVGAALLKQAGSGKVYPVALASTSVND
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atggacaaacaaactgcagagcaactactcaaaacggcaatagctgatgaaggtgctcaa
tttagagaaggtcagtgggaagctattgatgctttagttaaccacaatcaaaaattgtta
gttgtccagcgaactggctggggtaagagctccgtctattttatcagtaccaaaatattc
agagaccgaggcaaaggtccaactattatagtgtcaccgttgcttgctttaatgcgtaac
caaatcgaatctgcgcagcgtttagggatcaaagcggtgacgatgaactccactaacata
gttgattgggaaaaagttactaaagatattctcgatgacaaaattgattgtttgttgatc
tccccagagcgtttagccaacgataaatttgttgaaacggttcttcgcccaatatcagat
agcatctcactcatggtggtggatgaagcacattgtatctctgactgggggcatgatttc
cgtccggactatcgacgcatagtaaatattttaaagctattgcctgaaaatacaccggta
ttgggaacgacagcgacagcgaatgatcgagttgttgatgacatacaaacccagttaggt
aacatcgaaatacagcgcgggacacttatccgagagagtcttgctctgcaaaacatagta
ttaccagatcaaccatcacgcttagcatggttagctcaaactattcctaccttagccagt
acaggtattgtatacgtacttactcaacgagatgctgacatagtatctctatggcttaat
atatgcggcattgatgcaaagccttactacagtggtgttacggaccctgagtttgttaat
gaacgaggtaaactggatactaacgcgtatcgcgagcatctagaacaacaattgttgaac
gacaaattgacagtcttggtcgcaacgacagctttaggtatgggatatgacaaaccaaac
ttaggctttgttatccacttccaagcaccaggttcaattgtggcattctaccaacaagtt
ggccgtgctggacgaggaatagattctgcggtaggtgttctaatgtcaggagaagaagat
tccagaattcacgactttttccgaaaaacggcatttcctacagaagcaaatgtaaatcgc
attttgaaggctctagatcctgttgagtatttaacggcggagggcttagagaaagaagcg
aatctaccgcaagggagaattgagcatgtacttaaatttttagcggctgagtatccagct
cctgttggaaatgttgggaaaaaatggcatcgaaacccagttccttaccaaatggacatg
aataaagtccaggctattacagatattagagaagctgagtgggctgaaataggaaagtat
ttaacaacagaaaattgcctcatgcttaatgtccgtaatgctttagatgaccattctgat
gagccatgtggtaaatgtagaaattgtattggtgaagacttattgcctaccgacgtcgat
actgcacttggtcaaaaggcggctgactttttgtgccgaagcgaaatggtaatggagcca
agaaagcaaatagcagtctcaaatgatgaagcggcgaaaacgttcgtcaaatatgacttt
ccgaggttactgggtgatttagcagcagaacctggtcgaattctttctcgttggggagat
gccggttggggccaaatggtggctgatgacaagcacaacaaccactttagagatgagtta
gtagatgcaacagtcgagatgataactgaacgttggaaaccagatgcttttccaacatgg
gtatgttgtattccttcattaaaccataagacgttagttcctgattttgcaaaacgttta
gcagataagttgggccttcctttcgtggactctttggataaagtattagagaatgaacca
cagaaatggcagcagaatcgatatcatcagtgctcgaacttagatggtgcattcaaggtc
actaaattgggacctgaaggtagtgttttattagttgatgacgtagttcgttcgaaatgg
accttcacggtaggtgctgcattattgaagcaagctggcagtggtaaagtatacccagtc
gcgctagcttccacatcggtaaatgattaa
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