Vibrio sp. J383: M4S28_25370
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Entry
M4S28_25370 CDS
T11471
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
viz Vibrio sp. J383
Pathway
viz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
viz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M4S28_25370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
viz03019
]
M4S28_25370
Enzymes [BR:
viz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M4S28_25370
Messenger RNA biogenesis [BR:
viz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
M4S28_25370
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
AAA_19
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UQV23842
LinkDB
All DBs
Position
2:complement(2030697..2032280)
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AA seq
527 aa
AA seq
DB search
MSFTSLGLSEPILKAIEAQGYDKPSPIQEKAVPAVLTGKDVMAAAQTGTGKTAGFTLPIL
EMLSKGPRVRQNQVRALVLTPTRELAAQVNGSVVKYGINLPLTSTVVFGGVKINPQMQKL
RKGSDVLVATPGRLLDLYNQNAVRFDQLEILVLDEADRMLDMGFIRDIRKILAFLPKKRQ
NLLFSATFSDDIRGLAKGLVNNPVEISVSPANSTAPTVEQSIYPVDKKKKSAMLAKLIKD
NDWRQVLVFSKTKHGANKLSHFLDEQGISAAPIHGNKSQGARTKALENFKTGKVRVLVAT
DIAARGIDIPQLPQVVNFDLPNVSEDYVHRIGRTGRAGEVGKAISLVCADEVGELFGIER
LIQQVLERRELEGFAPVNKLPESRLDSRPIKPKKPKKTREHSDGQRSGENARGHKPAGKN
KRHVSGSGSAPKRKPNANKPNSGNKASDSNSTVAGDDKSLRNNGSNYKRGNAANKPSTNS
SGKPAGAGKPKKSGFGGGNGSSKPAGNKPTGNKPSPSRSRSKPAPQK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgagttttacctccctgggcctttctgaaccgatccttaaagctattgaagcacaaggt
tacgataagccatcaccaatacaagagaaagccgtacctgctgtcctaacgggcaaagat
gttatggccgctgctcaaacaggtacaggtaaaactgcaggcttcacgctacctattctt
gaaatgttgtcaaaaggccctcgcgtacgtcaaaaccaagtacgtgcgctagtgctaaca
ccaacccgtgagcttgctgcgcaagtaaatggcagcgtagtgaagtacggtattaactta
cctcttacttctacggtggtgtttggtggtgtgaaaattaaccctcagatgcaaaaactg
cgtaaaggtagtgatgtactggtagcaacaccgggtcgtctacttgacctatacaaccaa
aatgctgtgcgttttgatcaactagaaattctagtgctagatgaagctgaccgcatgcta
gacatgggcttcattcgcgatatccgtaagatcttggcttttctacctaagaagcgccaa
aacctactgttctcagcgacgttctctgatgatattcgtgggttggcgaaaggcttagtc
aacaacccagttgaaatctcggtaagccctgcaaactcaacggcaccaactgttgagcaa
agcatctacccagtagataaaaagaaaaaaagcgcaatgctagcgaagctcatcaaagat
aatgattggcgacaagtgcttgtgtttagcaaaacgaaacatggcgcaaacaagctttca
cacttccttgacgagcaaggcatctcagcggctcctattcatggtaacaagagccaaggc
gcgcgtactaaagccctagagaacttcaaaacgggtaaggtacgagtattggtggcgact
gatatcgcagcgcgtggtatcgatattccgcaactgcctcaagtcgtgaatttcgacctt
ccaaacgtatcagaagattacgttcaccgtattggtcgtactggccgtgctggtgaagtg
ggtaaagcaatttcattggtttgtgctgatgaagtgggtgaactgtttggtatcgagcgc
cttattcagcaagtgcttgagcgccgtgaacttgaaggttttgcacctgtaaacaagttg
ccagaatctcgtttggattcgcgcccgattaagcctaagaagccgaaaaagacacgtgaa
cactctgatggtcaacgttctggcgagaatgctcgcgggcacaaaccagcaggtaagaac
aagcgtcatgtttctggttcaggttctgctcctaaacgtaagcctaatgcgaacaagccg
aactcaggcaacaaagcttctgacagcaactcaacagttgcgggtgatgataaatcttta
agaaataatggcagtaactataagcgtggtaatgcggcaaacaagccttctacgaatagt
tctggtaagcctgctggtgcaggtaaacctaagaagtctggtttcggtggcggtaatggc
tcgagcaaaccagcaggtaataagcctacaggtaacaagccttcaccatctagaagccgt
tctaagcctgcacctcagaaatag
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