Varroa jacobsoni: 111259014
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Entry
111259014 CDS
T07417
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vja
Varroa jacobsoni
Pathway
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111259014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111259014
03019 Messenger RNA biogenesis [BR:
vja03019
]
111259014
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111259014
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111259014
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_3
zf-CCCH_2
zf-CCCH_4
zf-CCHC_2
Nab2-like_zf-CCCH_
zf-CCCH_10
YyzF
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
111259014
NCBI-ProteinID:
XP_022686418
LinkDB
All DBs
Position
Unknown
AA seq
324 aa
AA seq
DB search
MEELVANCKDVMFEIELALDQQLGAMPLPFTGMDKSGALACTLFARGRCTRDNQCPFRHI
KGDRTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSRFNACSNKECPFLHIDPDSK
IRDCPWYDRGFCRHGPTCRHRHTRRVVCISYLCGFCPEGPNCKFVHPKFDLPDISQLQAK
KSTFTCHYCNESGHKLWHCPKMPPDVKEKYQRERDEVVAQNQQAQQFATQLRQSTMAAAA
AAATTTAGGGDNNANLGNSPALGGAGAGNPGGGGPGTGGHRQAGPRNYRPLDEVTCFKCG
EKGHYANKCPKGHLAFLSSALPGN
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
atggaggaattggtggcaaactgcaaagatgtcatgtttgaaatcgagcttgcacttgac
cagcagctcggcgcaatgcctctgccgtttaccggtatggacaagtccggtgctttggcg
tgcaccctcttcgctcgtggacggtgtacgcgtgataatcagtgcccatttcgccatatc
aaaggcgaccgtacagtcgtttgcaagcattggctacgcggcctttgcaaaaagggtgac
cagtgtgaatttttgcatgaatatgatatgacgaagatgccggagtgttatttctactca
agattcaacgcttgctcgaacaaagaatgtcctttcctacacattgatcccgactcaaag
attcgcgattgtccgtggtacgatcgaggattctgccggcatgggccaacctgccgccat
aggcatactcggcgagttgtgtgtatttcatatctgtgtggcttctgtccagaaggacca
aactgtaaatttgtccatccgaaattcgacttgccagatatcagtcaactacaggctaaa
aaatccacgtttacctgccattactgcaacgaatcaggacacaaactgtggcactgtcct
aaaatgccgccagacgtcaaagaaaaataccagcgtgaaagagatgaagtagttgcccag
aaccagcaggcgcaacagttcgctactcaattacggcagagtaccatggctgctgctgcc
gctgctgcaactacaactgccggtggtggggataacaatgcgaacctgggaaattcaccg
gcgctggggggcgcaggtgcaggaaaccctggcggaggtgggcctggtactggcggacat
cgccaagcaggcccccgaaattaccggcctcttgacgaagttacttgtttcaagtgtggc
gaaaagggtcattacgcaaacaaatgcccgaaaggccaccttgcttttctcagtagtgcc
ctgcctggaaattaa
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