Varroa jacobsoni: 111259419
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Entry
111259419 CDS
T07417
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like isoform X1
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
vja
Varroa jacobsoni
Pathway
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111259419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111259419
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111259419
U7-dependent histone pre-mRNA processing factors
111259419
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Motif
Other DBs
NCBI-GeneID:
111259419
NCBI-ProteinID:
XP_022687158
LinkDB
All DBs
Position
Unknown
AA seq
743 aa
AA seq
DB search
MNSIVKIHAISGVYDESPHCYLLQIDEFKILLDLGWDEFFNPKPIKDMRRLVSQADAILL
SYPDPLHLGALPHLRHEIKCPIYATVPVHKMGQLFMYDLHQSRHNMEHFEQFSLDDVDEA
FDMITQLKYSQSVQFQGKGHGISITPLPAGHMLGGTVWRITKDGEENIVYAVDYNHKRER
HLNRCALETIQKPSLLITDAFNANYNQPRRRTRDEQLLTTIMTTVRSGGNVLIGVDTAGR
VLELAHMLEQLWRNQDSGLMAYSLVMASNVAKSVIDFAKSQVEWMSDKVMRSFESARNNP
FQFKYLIPCYSHGQIQSVPEPKVVLASMPDLESGYARDLFMLWASSERNSVILTSRSSPG
TLARTLIDQKPKVVHLTLKQRVPLEGEELEEHLRVERVKKEKELKTEDSSDESDVDGAIE
DVEEMEPDSKRPRLTSESGFAEKQSFFQKPTKKGHLMFPVREDKLKWDEYGEIINPEMFS
NMGLNAPGDILEPTIPDEQRNGQPPVGKEEVKSEPPPEPSELPTKCIAKEIVIQVRCNVQ
YIDFEGRSDGESIRSLVQMMKPKRLVIVRGGDESNTKAFYDYCVSTGCVQGHGVFAPRAH
EVVDATTESHIYQVKLKESLLAMLKFCKVKNDELAWVDAEVAEPEEDSDLRRGDEATEEL
LALQPVQDQKLRPRHNPLFISDFKLSDFRQVLLKNGISAEFSEGVLYCNNRSVTVERGLI
VKGSLTEDYFRIRDLLYEQYAIL
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgaactcaattgtgaaaatacacgctatatcgggcgtgtacgatgagtctccacactgt
tacctcttacaaatcgatgaattcaagattcttctcgatcttggttgggacgaatttttt
aatccgaaaccaatcaaggatatgcggcgattggttagtcaagcggacgcgattttgtta
tcatatcctgacccgctgcatttgggtgcgttgccgcacttgcgccacgaaataaaatgt
ccgatttatgctactgtaccagttcataaaatgggccagttgtttatgtatgacctgcat
cagtcccgccacaatatggaacactttgaacagttttcccttgacgatgtcgacgaagca
tttgacatgatcacgcagctaaagtacagtcaaagtgtacaatttcagggaaaaggtcac
ggtatcagcattacgccactacctgctggccacatgctcgggggaacggtatggcgaatc
accaaggatggagaagagaacatcgtgtatgccgtcgactataatcataaaagagaacgt
caccttaatcgctgcgcactagaaacgattcaaaagccgtcactcctaattacagatgcc
ttcaatgcaaactataatcagcctcgtaggcgaacccgggatgaacagcttctgacgaca
atcatgacaaccgtccgttctggtggaaacgtgctcataggtgttgatactgcgggtcga
gtcttagagttagcacacatgcttgaacagttatggagaaatcaagattcaggactcatg
gcctattcgttggtgatggcaagcaatgttgcgaaaagcgttatagactttgccaaatca
caggtggaatggatgagtgacaaagtgatgcgatctttcgaaagtgcacgcaacaatcct
tttcagttcaagtacctcataccatgttacagccacggccaaatccagtcagtccccgaa
ccaaaggttgttctcgcttccatgcccgatttggagtctgggtatgcccgagaccttttt
atgctgtgggcaagtagtgaaaggaactctgttattctcacatcgcgaagctcgccaggg
acattagcacgcactcttatagatcaaaaaccgaaagttgtgcatctcacgctcaagcaa
agagttccactggaaggagaggagcttgaagagcatcttcgagtggagcgggttaaaaag
gagaaagagctcaaaactgaagactcttctgacgaaagtgacgtcgatggagcaatcgag
gatgtggaagaaatggagcccgattcaaagcggccacgcttaacctcagaaagtggcttt
gccgaaaagcagtcattctttcagaagccaacaaagaagggtcacctaatgtttcccgtc
cgtgaggataaacttaaatgggacgaatacggggagattattaatcctgagatgttctca
aatatgggtttgaatgctcccggtgacattttagagccgacaataccagatgaacagcgt
aacggccaacctccagtaggaaaagaagaagtaaaatcagagccgccgcctgaaccatca
gaacttcccaccaaatgtattgctaaagaaattgtcattcaggttcgttgcaatgtgcag
tatatagactttgagggacgtagtgatggcgaatccattcgatccttagtgcaaatgatg
aagcccaaacgactggtcattgttcgtggaggagacgaaagcaatacaaaagcgttctac
gattattgtgtgtcaaccggctgcgtccagggtcacggggtttttgctccgagggctcac
gaagtcgttgatgccactactgagtctcatatatatcaggttaagctaaaagagtccttg
ctagcgatgttgaagttctgtaaagttaaaaatgatgagctggcttgggtagacgccgag
gtggccgaacctgaagaagactcggacttgaggcgtggcgatgaggccaccgaagagcta
ctggcgttgcaacctgttcaagaccagaagcttcgtccacggcacaatccgttattcatt
agcgacttcaagctatcagacttcagacaggtactactgaaaaacggaatttcagctgaa
ttctcggaaggtgtactttactgtaacaatcgtagtgtaactgtcgagcggggtttaatt
gttaaaggttcactaactgaagactacttccgtatccgcgaccttctttatgaacaatac
gctatactttag
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