Varroa jacobsoni: 111259884
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Entry
111259884 CDS
T07417
Name
(RefSeq) DNA mismatch repair protein Msh6-like isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
vja
Varroa jacobsoni
Pathway
vja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111259884
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vja03400
]
111259884
DNA repair and recombination proteins [BR:
vja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111259884
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
DUF6050
CCDC71L
Motif
Other DBs
NCBI-GeneID:
111259884
NCBI-ProteinID:
XP_022687970
LinkDB
All DBs
Position
Unknown
AA seq
1150 aa
AA seq
DB search
MSQNTLFAFFKKVDTPSKRKKELHCLNNRAVENENTPVEANSIPPKTPTVGTPQTRTSRA
MAKSDSPNSTPKSSAKTSKSDTPFARKQNSFNKEDGKKRKPLKPANGEKPKKRARLEEHD
TDDWAEELPSSEEEDVDSGDDYIPPGDGSEKGHDSSDSEPEGDVEMEPEPPTENDDDDED
IAESPVKKSRRAPRHSRSAILKTPTTQEESGSSQSTEVGIPPQWLHLTLNFVTEPRDSER
RPRSHPDYDYTTLYVPPDYLNKATPGMRQWWVIKSRHFDTVLFFKVGKFYELYHMDAVIG
VEQLGLTFMKGEWAHSGFPEIALQRNMEALVQKGYRCARVEQTETPTMMEERCKKSGKTS
KYDKVVRREVCQISSKGLQLCGSMEASGTSYLLAVRQKGKRFGVCLVDTSVARLHVGEFE
EDHQLSCLRTLVSQFTPVEALLERTCHNDVKLIVEAIGAKIIVDRNRMTPEQCLTMIREG
NYFKEKEYPIGLKTLLSEDDPLMSTPRKGCELAVQSLAAILDSLKEALLLEDVLTMGDVE
PIQFKYESGSSQYLPKVMILDSVALTNLEIFQNSCGSSEGSLLSTINFCSTPFGLRELKK
WLLAPSCIADVIESRWDAVGDLMSNNSVAKKVQERLRKIPDMDKMLARIHSLSLKKGNHP
DSRAIIYNSELFAKKKIEEFIEVLQGFQDSLLICDVFKEVNLKSSLLKSVVTKQENGGQF
PDLQDALDFFERAFDQKKALKEGKITPVAGVDAEFDDATEQVNKIKDELDEHLKLQIKHF
GTKVTYTGTGRTAYQLEVPETAASKADPSKHIFKGQRKGFRRYSTAESERFCAKLLEAQD
AREAAGKDMMRRIFVAFDERRPLWKKAIECLCVLDCLLSLALYGLNAGGSVCRPKIVSAA
NDTKPMMRIKNGSHPCLLKVLGANKLIANDFALGIQEKGRCNGSSVALLTGPNMGGKSTL
MRQVGLLAVLAQLGAWVPADEMEFSLVDRVFTRLGASDHITLGESTFLVELLETSAAFKH
GSRHSLLLLDELGRGTATHDGASIAYAVLNRLVGHEMRTLFSTHYHELASDVRDVFLGHM
AYVVEREDEVVFLYKFVEGNCEKSFGFNAARLAGVSPKLIEQSLEKAQEFENQSKLLQKF
ARYMTLDSER
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaaacacattgtttgccttcttcaaaaaagtagatacgccatccaagcgcaaa
aaagaattgcattgcctgaacaatcgtgcagtagaaaatgaaaatacgcctgtggaagca
aatagtataccaccaaaaacgccaacggttggtacgccgcaaacacgcacttcacgggca
atggcaaaaagtgactcaccaaactcgacccctaagtcatcagctaaaacttccaagtcc
gatactcctttcgcgaggaagcaaaactcgttcaataaagaagatgggaaaaaaagaaag
ccactaaagcctgccaatggggaaaaacctaagaagcgagctcgcctggaggaacacgat
accgatgactgggctgaagagctgccgagctccgaggaggaagatgtcgattctggagat
gattacattccgccgggtgacggatcggaaaagggacacgactcgtctgatagtgaacca
gagggcgacgtagagatggagcctgaaccgcctacggaaaacgatgatgatgacgaagat
attgctgaatcgccggttaaaaagtcccgccgagcacctcgacactctcgtagcgcaatc
ttgaaaacacctacaactcaagaggaatctggctcttcgcaatctactgaagtcggcatc
cctccccaatggttgcatcttacgctgaacttcgtaacagagccgcgcgactccgaacgg
aggccaaggagtcatcccgactatgactacacaacgctctacgtaccccctgactactta
aacaaagccacaccgggtatgcgtcagtggtgggtgataaagtctcgccactttgatact
gttctctttttcaaagtgggaaaattttacgaattgtaccacatggatgccgttattggt
gtagaacagctcggactaacattcatgaagggtgaatgggctcattcaggtttccctgaa
attgccctgcagagaaatatggaagcgcttgtacaaaaaggttatcgatgcgctcgtgtt
gaacagaccgaaacccctactatgatggaggagcgatgcaaaaagagtggaaagacgtcg
aaatatgacaaggttgtccggagagaggtatgccagatctccagtaagggcttgcagcta
tgtggttcaatggaagcttcgggtacctcatatcttcttgccgtaaggcagaaaggaaaa
cgatttggtgtatgtttggtggatacaagcgtagcccgtctgcatgtgggcgagttcgaa
gaagatcaccagctgtcttgtctgcgcactctagtaagccagtttacgccagttgaggcg
ctcctcgaacgaacatgccataatgacgtaaagcttattgtggaggctatcggtgcaaaa
ataattgttgaccggaaccgtatgacgcccgagcaatgcctcacaatgatccgtgagggt
aactacttcaaggaaaaggagtacccgatagggttgaagacattgcttagtgaagatgat
cctttaatgtccaccccacggaaaggctgcgaattagcggttcagtccttagctgcgatt
ctagatagccttaaggaggcactccttctcgaagacgttcttaccatgggcgacgtcgag
cccattcagttcaaatatgaaagtggttccagccagtacttgccgaaggtgatgattctg
gattctgttgccctaactaaccttgaaatctttcaaaacagttgtggatcatctgagggg
tcactgctatctacaataaacttctgttctactccattcggattacgtgaactgaagaaa
tggttactggccccatcatgtattgccgatgtgattgagtcacgttgggatgctgttggt
gatctgatgtcaaataattcagtggccaaaaaggttcaagaacgacttcgaaagattcca
gatatggataagatgctcgccagaattcactcgctcagtctcaaaaagggtaatcatcca
gattcgagagctatcatatacaacagtgaattgttcgctaagaagaaaattgaggagttt
attgaggtgctgcagggattccaggattctcttttaatctgtgacgttttcaaggaagtg
aatctgaagtcgtctttactcaaaagtgtagtcacgaaacaagaaaacggtggccaattc
cccgacttgcaggatgctctcgatttttttgagcgggcatttgatcagaaaaaggctctg
aaagagggcaaaatcactccggttgctggagtggatgcagaattcgatgatgcgacggaa
caggtcaacaaaataaaggacgaacttgatgaacatttgaaactgcaaatcaagcacttt
gggaccaaggtgacgtatacaggcactggacgaacagcgtatcaacttgaggttccggaa
acagcggcttcaaaggcggatccctcgaagcacatattcaaaggtcaacgaaaaggcttt
cgacgctactcgacagcggaaagtgagcgattttgtgcaaaactgttagaagctcaggac
gctcgtgaagcggcaggaaaggatatgatgaggagaatatttgtagcttttgatgagagg
aggcccctatggaaaaaggccatcgaatgtctttgcgtcctggactgtcttctgtctcta
gctctgtacggattaaacgcaggcggatcagtttgcagaccgaaaattgtttctgccgct
aacgataccaagcccatgatgcgcatcaaaaacggttctcatccgtgcctgctaaaggtc
ctcggagcgaacaagcttatcgctaatgattttgccctcggcatccaggaaaagggccgt
tgcaacggcagctctgtggctctattaaccggacccaatatgggcggaaagtctacgctc
atgcgtcaggtcggtctattggctgtgcttgctcagcttggcgcatgggtcccggccgac
gaaatggaattttcccttgtcgatcgtgtgtttacccgacttggagcttctgatcatatc
acccttggtgagtcgacgttcctggtggagctcctggagacatcggctgcattcaaacac
ggctctcgacattcgttgcttctcttggatgaactgggtcgaggaactgccacacacgat
ggagcttctattgcttatgcagttctaaatcgcttggtggggcatgaaatgcgcactctt
ttctctacacattatcacgagcttgcttcggacgttcgagacgttttccttggtcatatg
gcttacgtcgttgaacgcgaagacgaggtagtctttctatataaatttgtcgagggaaat
tgcgaaaagagttttggattcaacgcggctcgtttggcaggtgtttcacccaagctaatc
gagcaaagcttggaaaaagcccaggaattcgaaaaccaatcgaagcttttacagaaattt
gcgaggtacatgaccctcgacagtgagcgttag
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