Varroa jacobsoni: 111260176
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Entry
111260176 CDS
T07417
Name
(RefSeq) exosome component 10-like isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
vja
Varroa jacobsoni
Pathway
vja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111260176
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111260176
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
111260176
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
DUF3909
Motif
Other DBs
NCBI-GeneID:
111260176
NCBI-ProteinID:
XP_022688476
LinkDB
All DBs
Position
Unknown
AA seq
932 aa
AA seq
DB search
MEKPEASTAVGVPEKQSFGKYESFEDYKRVLLQSIMNFTAAANKLPPPGQEHDYYSSFPL
FKRVMGAEGQAIMEMMSSLASQQVGKQNMFQAEGTDFDEKVDLLTEVNDVLLERAGISLD
VAKGVKQEQSELQLATVSKQIDTIWNRKNDKVKRDSATSITLLTAKNVTRPQLSFPEKID
NSNSLFVPIIKEKPNAKKPLAILIERHEDGREVYSHPYEVEIETFQPSEEHIAHNVKDSL
SMADTPLHMVNTSEAIDEMMAHLRIQKCIAIDLEHHSFRSFQGFTCLVQISTWEKDYIVD
PLVLRAELHIMNEVTTDPRIVKVLHGAVSDVQWLQRDFGIYIVNLFDTGVAAKLLNFERL
SLSYLLKYYMSVEADKRFQLVDWRIRPLPEEMIAYARGDTHYLLPIFERMKRDLADASNT
QAFTREEVFNRCSTLQGNLLRAVWERSSQICLRRYEKPLLTEDSHLQLTKASHKKLNDKQ
MYALKHLYAWRDRLAREHDESTGYVLPNHMLLQMCEVLPREIQGIIACCNPCPPLVKQQL
HELHQIILKAREVQLSNPILNAPKLEIPVPSTLHMFDMDNMLHIVHDIPVAHAHDDTHVR
LPTLIDDNGELIRSEEGKSLSDSGVPITVPRLRHSALFPHWEEADQVKRARLPRNLYVQR
TPEGQVQRLRMITPYERYVKEVERTELERDSLNKMLQEARENAELCQPQECETSQNSTAP
KEQSSECIQDEEDEKDSEIDEEFGEKSQESEPTVIRGARSRKRKREEPSIPFAGGEEISY
ANTQTSKLERRKRKKQRQQQKQREQTQPFNYAGAIAEQSQQPRKHQNQQYNNRDNRQDGH
LGSGGRGQGKFYNQERNRQRQQFDGMEELGQAASNSEHPGSRGGTNDWGNPVRGEIQKVR
RKHKFHGGNRSMIVSRSGGQDGGVSSMRWPSK
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaaccagaggctagcacggcggtcggtgtacctgaaaaacagagctttggaaaa
tatgagagttttgaggattataaaagggtccttctacagtcaataatgaattttacggca
gccgcgaacaaattgcccccacccggtcaggaacatgattattatagtagttttccgctc
ttcaaacgcgttatgggggctgaaggacaggccattatggaaatgatgtcttcgttggct
agtcaacaggtcggcaagcagaacatgttccaggcagagggcaccgactttgatgaaaag
gtggaccttcttactgaggttaatgatgttcttcttgagcgagcaggaatatcgcttgat
gtagctaaaggtgtaaaacaggagcaaagcgaacttcagcttgctacagtgtcaaaacag
atcgatacaatttggaatcgaaaaaacgacaaggtgaaacgtgattctgctacatcaata
actcttctaacggctaagaatgtaactcgaccccagctatcatttccggagaaaattgac
aactccaattctttgttcgttcctatcattaaggagaagccgaatgccaaaaagccgtta
gcaatactaatcgaaagacacgaagacggtcgagaagtatacagtcatccatacgaagta
gaaattgaaacgttccagcccagtgaagagcacatcgctcataatgtcaaagattcgcta
tcgatggctgatacaccgctccacatggtgaacacgtcggaagccattgacgaaatgatg
gctcatttacgaattcagaaatgcatcgcaattgatctcgagcatcactcttttcgttca
tttcagggtttcacatgtctagtccagatttctacatgggagaaagactatattgtcgat
cctctagtactacgagctgaactgcatattatgaatgaggtgacaacagacccacgaatc
gtgaaagttctacacggtgctgttagtgacgtacaatggcttcaacgtgattttggcatc
tacatagtgaacctattcgacactggcgtagctgctaaacttttgaactttgagcgattg
tcattaagctatcttcttaaatattatatgtcagtggaggcggacaaacgatttcaacta
gtagactggcgtattcgacctctacctgaggaaatgatcgcgtatgccagaggggacacc
cattatttgttaccaatttttgagcgaatgaaacgagacttagctgatgcatccaataca
caggcttttaccagggaagaagtgtttaaccggtgttcaactcttcagggcaatttatta
cgtgcagtatgggaacgtagttcacagatttgtttacggcgttatgagaagccgctgctt
actgaagatagccacctacagctgacgaaagctagtcacaaaaaattgaacgataaacaa
atgtatgcattaaagcatctttacgcatggcgggatcgtttagccagggaacatgacgag
agcaccgggtacgttctaccgaatcacatgttattgcaaatgtgtgaagtgcttcctcgc
gagattcaaggtattatcgcttgttgcaacccttgtccgccactggtcaaacagcagctc
cacgaattgcaccaaatcattctgaaagcccgtgaagttcaactaagcaatccgattctg
aacgccccaaaattagaaatacctgtgccatctacgttgcacatgttcgacatggacaac
atgcttcatattgtacatgacatccccgtggcgcatgcccacgacgatactcatgttcga
ctaccaacacttatagatgataacggtgaactgataagaagcgaagaaggcaaatcactt
agtgacagcggtgtacctatcacggtgcctcgcctgaggcattcggctctctttccacat
tgggaagaagcggatcaagtaaaaagggcgcgtctcccacgtaatctatatgtgcagcgg
acgccggaaggacaggttcaacgtcttcgtatgattacgccctatgaaagatacgtgaaa
gaagtggaacgaaccgagcttgaacgtgattctcttaacaagatgcttcaggaggcaaga
gaaaacgctgaactctgtcaaccacaggagtgtgagacatcgcaaaattcgactgccccg
aaagagcagtcgtcggaatgcattcaagacgaagaagatgaaaaagattcggagatcgac
gaagaattcggggaaaaatcacaagaatcggagcctaccgtcatccgaggggcgaggtcg
agaaaacgaaaacgggaagaaccatcaattccgtttgctggcggcgaggaaattagttac
gcgaatacgcaaacgtcgaagttggagaggagaaaacgaaaaaaacagagacaacagcaa
aagcaacgcgaacagactcaaccgttcaactatgctggggccatcgccgaacagagtcag
cagccaagaaagcaccaaaatcaacaatataacaacagagacaataggcaagatggacat
ttaggatcaggcgggcggggccaaggaaaattctacaatcaagaacggaatcgtcagaga
cagcaatttgacggtatggaggaactcggccaagcagcgtcaaattcagagcatcctggt
agtaggggtggaactaacgactggggtaatccagtgagaggggaaattcaaaaggtccgt
agaaagcacaaattccatggaggcaaccgcagcatgattgtgtccagaagcggtggtcag
gacggtggggtctcatctatgagatggccttcgaaataa
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