Varroa jacobsoni: 111260756
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Entry
111260756 CDS
T07417
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
vja
Varroa jacobsoni
Pathway
vja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111260756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111260756
03041 Spliceosome [BR:
vja03041
]
111260756
03036 Chromosome and associated proteins [BR:
vja03036
]
111260756
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111260756
Spliceosome [BR:
vja03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111260756
Complex B
111260756
Complex C
U2 SnRNP specific factors
111260756
Chromosome and associated proteins [BR:
vja03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111260756
TFTC complex
111260756
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Paf1
Motif
Other DBs
NCBI-GeneID:
111260756
NCBI-ProteinID:
XP_022689477
LinkDB
All DBs
Position
Unknown
AA seq
1212 aa
AA seq
DB search
MFLYNLTLQRATAITASCHGNFSGHKQQEIAVAKGKILEILKPDPNTGKVHTVYATDVFG
VIRSLAGFRLTGGSKDYLIVGSDSGRICILEFNPTKNVLEKVHMETFGKSGCRRIVPGQY
LACDPKGRAVMIGAVEKQKLVYILNRDSNARLTISSPLEAHKSNTLVYHMVGVDVGFENP
MFACIELDYEEADNDHTGEAAKSTQQTLTFYELDLGLNHVVRKYSESLEEASNFLIAVPG
GSDGPSGVLVCSENFITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVSSTQHKTKSMFF
FLAQTEQGDIFKITLECDEDMVTEVKLKYFDTLPVAQTMHVLKSGFLFVASEFANHALYQ
IAHLGDNQDEPEFSSSIPLEEGDTFFFVPRELKNLVLVDEIDSLAPIMTAQVADLTNEDT
PQLYAACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVKRRVDDDYDAYIVVSFIN
ATLVLSIGETVEEVTDSGFLGTTPTLACHQIGDDALVQIYPEGIRHIRADRRVNEWRTAA
KKQIVKCAVNQRQVVIALSGGELVYFEMDSAGQLNEYTDRKEMNGDVLCMALASVPAGEQ
RTRFLAVGLADETVRVISLDPASCLAPLSMQALPANPESLAIVDMSSHDEDSELSALYLN
IGLLNGTLHRTVLDAVTGDLSDTRIRFLGSRSVKLFKVKMQATDAVLAMSSRCWLSYLFQ
NRFHLTPLSYDSLEYASGFCSEQCPEGIVAIAGNTLRILALEKLGAVFNQVSSPLEMTPR
RFAIDTKARKIIVIETEHNAYNEQMKEKRKQQVAEEMVEAAGEEEQEMAAEMAAAFLSED
LPEATFGAPRAGANLWASQIRIINPADLSTVFKLALEQNEAAVSCALVHFSGGKNDEGTL
LVGATRELQLNPRIVKSSSVRAYRVSDDCTSLELLHTTPMDDVPQVICPFQGRVLIGVGK
CLRIYDLGKKKLLRKCENKHIPNLIVTINVIGDRIVVGDREESFFFVRYRRQENQLNIFA
DDFSPRWTTASCMVDYRTIAGADKFGNVAVLRLPSEVSDEVDEDPTGVRSLWDRGWLGGS
AQKAEIVCATHVGELVVSLQKTALIPGGPEAIVYTTLAGGVGALIPFSTKDEHEFFQHLE
MYMRTEHPPLCGRDHLSFRSYYFPVKNIIDGDLCEQYNSLDAAKQKQIAEDLDRQPHEVA
KQLEDIRTRFAF
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgttcctgtacaatctgacgctgcagcgggctactgcgataaccgcttcatgtcatggg
aacttttctggtcacaagcaacaagagatagctgtagcgaaagggaaaattctggaaata
cttaagcctgatccgaataccgggaaagttcacacagtttacgctacggatgtatttggt
gtaattcgcagtctcgccgggtttaggctgactggagggagtaaggactaccttattgtc
ggttcagattcaggtcgcatctgtattctcgagttcaacccaaccaaaaatgtcctggaa
aaagttcatatggaaacctttggaaaatcgggatgtcggcgaattgttccaggccagtat
cttgcctgtgatcccaaagggcgtgccgttatgattggtgccgtggaaaaacagaagctt
gtctacatccttaaccgagacagtaatgcccgtctgacgatatcgtcaccattagaggca
cataaaagtaacactttggtctatcatatggtaggcgtggatgttggattcgaaaatccg
atgtttgcgtgcattgagctcgactacgaagaagctgacaatgatcatacaggggaggct
gccaaatctacacaacaaactcttacgttctacgagcttgatcttggtctgaaccatgta
gtccgcaagtactctgaatctcttgaagaggccagtaattttctaattgccgtgccagga
ggttcagatggaccgtcaggtgtgctcgtctgctcggaaaactttataacatataaaaat
tttggtgatcaacccgacatcagatgcccaattccacgtcgtaggaacgatttggatgat
ccagaaaggggcatgatttttgtgtcttctacacagcataagacaaagtccatgtttttt
ttcttggctcaaactgaacaaggcgatatattcaagatcacactcgagtgtgacgaggat
atggtaactgaagttaaattgaaatacttcgatacacttcccgttgcgcaaacaatgcat
gtactcaaatccggatttctcttcgttgcttcggaattcgccaaccatgcattatatcaa
attgcgcacctcggtgataatcaagacgaaccggagttctcatcgagtattccactggaa
gaaggagacacatttttttttgtaccacgtgaacttaagaacctagtgctagtcgatgaa
atagattcgttggctccgataatgactgcgcaggtggctgatctcacaaatgaagataca
ccccagctatacgctgcttgtggcagggggccacgatcatcattaagagtgcttcgtcac
ggtcttgaagtgagcgagatggctgtttcagagcttcccggcaacccaaatgctgtgtgg
actgtaaaaagaagagtggacgacgattacgacgcgtacatcgtggtgtcattcatcaat
gccacgttggtattgagtattggtgaaaccgtggaagaagtaacggactctggatttctc
ggtacaacgccaacactggcgtgtcatcaaattggtgatgacgctcttgttcaaatctat
ccagagggaattcgacatatacgagctgatcggcgtgtgaatgaatggcgtactgcggcc
aagaagcagattgtaaagtgtgctgttaatcagcgtcaggtggtaatcgcattgtctggt
ggggaactcgtttattttgaaatggattccgcaggtcagcttaacgagtacacagatcgc
aaagaaatgaacggtgatgttctgtgtatggcgctcgcatcagtgcctgcaggagaacag
cgaacacgcttcctcgctgttgggctcgctgatgaaacggtacgtgtaatttccttagac
ccagcaagctgtctggctcctctctccatgcaggcgttgccagcaaatccggaatcatta
gcaattgttgatatgtctagccacgacgaagacagtgaactttccgcgctatacctcaat
atcggtttgctaaacgggacgctacataggactgttcttgatgccgttaccggtgatctt
tcggacacacggatacgtttcctaggctctcgtagcgttaaactattcaaggtgaaaatg
caagcgaccgatgcagtattagcgatgtcctctcgatgttggctatcgtacttatttcaa
aacaggtttcatttaacgccgctttcatacgattcactcgaatacgcgtcagggttttgt
tcagaacaatgtcccgaaggtatcgtcgccattgcaggcaacacactgcgtattcttgca
ctcgaaaaacttggcgccgtgtttaatcaggtcagcagtccccttgaaatgacaccaagg
aggttcgccattgataccaaggcgagaaagatcattgtaattgagacggaacataacgca
tacaatgagcaaatgaaagagaagaggaagcaacaagttgctgaggaaatggtagaagct
gccggcgaagaggagcaggaaatggccgctgaaatggctgcggcatttctttcagaagat
cttcccgaggcgacgtttggcgcaccacgtgcaggagctaatctttgggcttcgcaaatc
cggattatcaatcctgccgatttatcaacagtctttaagcttgcacttgagcaaaatgaa
gctgctgtcagctgcgcattggttcacttcagtggaggcaaaaatgacgagggaactctt
ttggtgggagcgacccgagaactacagcttaatccgcgaattgtaaagagctcttcggta
cgtgcttaccgcgtctcagatgactgtacgtcgttagaacttctccacactactcctatg
gatgacgtgccccaagtcatctgcccgtttcaagggagggttcttattggagttggcaag
tgtcttcgcatatacgaccttgggaagaaaaaattgttacgaaaatgtgagaacaaacac
atccccaacctcattgttaccataaatgttattggagaccgtatagttgtcggcgatcgc
gaggaaagctttttctttgtcaggtaccgtcgacaagaaaatcagctaaatatatttgca
gatgacttttctcctcgatggacgactgcgtcttgcatggtcgactatagaacgattgcc
ggcgctgataagttcggcaacgtagctgtgctaagattgccgagtgaagtatcagatgag
gtggacgaagatcccacaggagtgcgaagtctctgggatcgcggatggctaggagggtct
gctcaaaaagctgagattgtttgcgccacccacgtcggtgaactggttgtctcattgcag
aagactgcgcttatcccaggcggaccagaggctatcgtgtatacaacacttgcgggtgga
gttggtgcgcttattccttttagcacaaaagacgagcacgagtttttccagcatcttgaa
atgtatatgaggacagaacatccacctctctgtggacgagatcatctgtcgtttcgaagt
tactactttccggtaaagaacataattgacggggatctgtgcgagcagtacaactcattg
gatgcggccaaacagaagcaaatagcggaagaccttgacaggcaaccgcacgaagtggcc
aaacagcttgaagatattagaaccagatttgctttctaa
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