KEGG   Varroa jacobsoni: 111260903
Entry
111260903         CDS       T07417                                 
Name
(RefSeq) probable histone-binding protein Caf1 isoform X1
  KO
K10752  histone-binding protein RBBP4
Organism
vja  Varroa jacobsoni
Pathway
vja03082  ATP-dependent chromatin remodeling
vja03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vja00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    111260903
   03083 Polycomb repressive complex
    111260903
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vja03036]
    111260903
Chromosome and associated proteins [BR:vja03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     111260903
  Histone modification proteins
   HAT complexes
    HATB complex
     111260903
   HDAC complexes
    Sin3A-HDAC complex
     111260903
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     111260903
    PRC2.2
     111260903
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     111260903
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    111260903
  Chromatin remodeling factors
   NuRD complex
    111260903
   NuRF complex
    111260903
   NuRF complex (fruit fly)
    111260903
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_EML_2 EIF3I WDR55 WD40_WDHD1_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_EML WD_LRWD1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_DCAF12 ANAPC4_WD40 WD40_RFWD3 WD40_MABP1-WDR62_1st eIF2A Beta-prop_RIG_1st Beta-prop_SPT8 Beta-prop_IFT140_1st MIOS_WD40 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 111260903
NCBI-ProteinID: XP_022689751
LinkDB
Position
Unknown
AA seq 420 aa
MGDKDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDYSVHR
LILGTHTSDEQNHLLIASVQLPGEDAQFDATHYDSEKGEFGGFGSVSGKIDIEIKINHEG
EVNRARYMPQNPCIIATKTPSSDVLIFDYTKHPSKPDPSGECQPDLRLRGHQREGYGLSW
NPNLNGHLLSASDDHTICLWDINAPPRDGHIVDAKSIFTGHVAVVEDVAWHLLHESLFGS
VADDQKLMIWDTRNPNTNKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRN
LKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSAEDAEDGPPE
LLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDDEPDTPAAELEANA
NT seq 1263 nt   +upstreamnt  +downstreamnt
atgggagacaaagacgccgttgaggagcgtgtgattaacgaagaatacaaaatatggaag
aaaaacactccatttttgtacgatctcgtgatgacccacgcactggagtggccttctctt
acggcgcagtggctgccagatgtgactcggccggaagggaaggattattctgtacatcgt
ctcattcttggaacgcatacgtctgatgaacagaaccatttgttaatcgcatcagttcag
ctgccaggcgaagatgcccaattcgacgctacgcactatgattcagagaaaggtgaattc
ggcgggtttggatcagtatccggcaaaatcgatatcgagattaagatcaatcacgagggt
gaggtgaaccgtgctaggtacatgcctcaaaatccgtgtatcattgctacgaagactccc
tcaagcgatgttctgattttcgactataccaaacacccttcgaagcccgacccctcgggc
gagtgccagcccgatctcagattgcgggggcaccagcgcgagggctatgggctgtcgtgg
aatccgaatttaaacggacatctactttcggcatcggacgatcacacaatctgcctgtgg
gatatcaatgccccgccacgagacggccacattgtggacgccaagagcatctttacaggt
cacgttgctgtggtagaggatgtcgcttggcatttgctgcatgaaagcctctttggatcc
gttgctgacgaccagaagcttatgatttgggacacccgcaatcctaacacaaacaagcct
agccacaccgtggatgcccatactgcggaggtaaactgcctctcgttcaatccctactca
gagttcatcttagcgactggatcagctgataagacggttgctttatgggatcttcgtaac
cttaagcttaagttgcattcattcgaaagtcataaggatgagatctttcaggttcaatgg
tctccgcataacgaaactatcctggcttcgtctggcactgatcgccgattacacgtctgg
gatctctcgaagatcggtgaagagcagagtgcggaagacgccgaggacggtccacctgag
cttctttttatccacggaggtcacacggcaaaaatcagcgacttctcgtggaaccccaat
gagccatgggtgatttgctccgtatctgaagataatatcatgcaagtgtggcaaatggca
gagaacatttacaatgacgacgaacccgatacgccggcagctgaactggaagccaacgct
tag

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