Varroa jacobsoni: 111260911
Help
Entry
111260911 CDS
T07417
Name
(RefSeq) RNA exonuclease 1 homolog
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
vja
Varroa jacobsoni
Pathway
vja03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111260911
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vja03009
]
111260911
Ribosome biogenesis [BR:
vja03009
]
Eukaryotic type
Pre-60S particles
RNases
111260911
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
Motif
Other DBs
NCBI-GeneID:
111260911
NCBI-ProteinID:
XP_022689757
LinkDB
All DBs
Position
Unknown
AA seq
1208 aa
AA seq
DB search
MFRSQGRLSGVVCPLHVVGQCNRPYCHFKHSPSVPQQQAPLGGSEPAGAESSPKTSDIVA
SGSIPTNLQQPPKRPLEPAKPARSHIPAIRVPQYRPTPIAVLQRRHQNAATNAARVLSTE
AGKVPAVGVDTYSTHQFAKADETRVIEPAFSEDEDDEEEAILMEIFQKGVMGESAEQQSN
AHPMGQLDDDRLKEPQRFEKRRHKEEETPNDFVIDLTEGDDYDASTTKKYDNEEMSKKKQ
SYRDEAKYLKRRLSSSSPKREDSLSLIGSSRSKDEGHSSSSSTSTASRKRHSSDATEHDY
KSRSTGSSNGHDRDQSSKESPFSSVSLLTEKDRLNGAKEKQHRKSNESAAEDSNEVDNRS
SSSKDHEKSSSRSKDRRRNKSRHSSSSKDRDRDKEKDQIKDRDRDKSKDKRKSSSSSSSS
SKDTRLSSSSSKEKSSSSNSSSHSKDTEQKRSTKHKTSNGFHSDKKEDSGNKKSGSSHRE
EKNHSKTSGVSISKRKSWGEHQGGYSDSGARSDDSARDHGDGGGSSSSEGRGSHRRTSTS
ADDRSKRVKIEPGVIAVGDIDINDVDLSDEDPEQECLRLFQECESQMSLNKDNNGPAKTT
QDSSLPVSVSEPSKVIDMVGVTRKRIAHDPGARLVATVPPVPKKPFRPSPAQQLVMRQEA
MQRARLKQQNSSNETQATPIFHPTTPTEQRRQRICTVSTDLVAAVAQRKNLALASAKARQ
VGIGADAAAGRSSTGAQVIKRIANTVPLPHATNHVQTKGVARVAHVAKALGPSDNPVAPP
RPRIQFDSNMKVPVNLRQLSLDKLIDLNNMICTTYEESYEKSLNEERDVCGRAKDRRVYS
NLVANLIMRLKKESGELGPSSTAPQAVSHADVLGGAKAKKMSFSIEKHRFRRNTSVDNMT
EEQFYEHMREKYLMKSTELDQMGFPRPCEGKPGKAEFRHEAALSAPPDPRTGNERTCVRC
KKVYFVDRDGMYLRHEECVYHWGKNWMRHVKRSNVREQQYTCCDAESGSDGCSVAKGHVF
DNPILKEDGGYMTTLTPEPAAANNFKKVYALDCEMIYTTRGTELARVSMVDMNLRTIYET
KVKPRNPVLDYNTRFSGLKMEDLESVTTELHEVQAAMLALVSADTILIGHSLESDLKALK
FIHSTVVDTSLVFPHKMGLPYKRALKNLLKDYCQKIIQDGVDGHDSAEDAKACMELMLYK
VKQDLKSE
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgttctcagggtcgtctttcgggggtggtatgcccacttcacgttgttggacaa
tgcaaccggccctattgtcactttaaacattctccgagcgttccacaacaacaggctccg
ctgggagggagcgaacccgctggcgcagaatccagccccaaaacttcagacattgtcgca
tcgggtagtatacctactaatctgcaacagcctccaaaacgacctttagagccagctaaa
cctgcgcgtagtcacatacccgctattcgcgtaccgcagtatcgtcccacgccaatagca
gttctccaacggcgtcatcagaatgccgctacaaatgctgctcgcgtattgtcaacggaa
gcgggtaaggtgccggcggttggggtcgatacctattcgacgcatcaattcgctaaggca
gatgagaccagggtgattgagcctgcattctcagaagatgaagacgacgaagaagaggcg
atacttatggaaatctttcaaaaaggtgtcatgggtgagtctgcggagcaacagtcaaac
gcacacccaatgggtcaattagacgacgatcggcttaaggaacctcaaaggtttgagaaa
cggcgtcataaagaagaggaaacaccaaacgacttcgtgattgatttgacggagggagac
gactacgatgcttcgacaaccaagaaatatgacaacgaagagatgtcgaaaaagaagcaa
agttacagagatgaggcaaaatatttaaaacggagactttcttcctctagcccaaaaaga
gaggacagcttgagtctaataggttcgtcgcgatcgaaggatgaggggcacagttcgtcc
tcttcaacgagcacagcgtcaaggaaacgacatagttcagacgcgacagaacacgattat
aagtctcgcagtactggcagcagcaatggacatgacagagatcaaagttcaaaggaaagc
ccattttcgtcagtatccctactgacggagaaagaccggcttaacggagctaaagaaaag
cagcacagaaaaagcaatgagtcagcagccgaagattcgaatgaagtagacaaccgtagc
agcagtagtaaagatcatgaaaaaagctcctcacgtagcaaagatcggcgtcgaaataaa
tcgaggcattcgtccagtagcaaagatcgagatagagataaggaaaaggatcaaattaaa
gacagggaccgcgacaaatcgaaagacaaacgtaaaagtagtagtagcagtagcagcagt
agtaaagacacgcgcttatcgtcgtcgtcgtcaaaggaaaaatcatcttcttcgaattcg
tcgtctcattcaaaagataccgaacagaaacgctcgacaaaacacaaaactagtaatgga
tttcactcggacaaaaaggaagatagcggtaataaaaaaagtggttcatctcatcgggaa
gaaaaaaatcattcgaaaacatcgggtgtctctatttcgaagcgtaagagttggggcgaa
catcaaggtggatattcagatagtggtgccagatcagatgatagcgccagagatcacggt
gatggtggcggttcgagcagttccgagggtcgcggcagtcacagaagaacatctacatca
gcagatgacagaagtaaacgagtgaaaatcgaacctggagtgattgctgtcggtgatata
gacatcaatgatgtggatctgagcgatgaagaccccgagcaggagtgtcttcgtctattt
caagaatgtgagagtcaaatgagccttaataaggataacaatggtccagcaaaaacgact
caagattctagcctaccggtttctgttagcgagccgtcgaaggttattgacatggttggg
gtaactcgaaaacgcattgctcacgatcctggagcccgccttgtggcgacagtccctccg
gtaccgaaaaaacccttcagaccatctccggcgcaacagttggtcatgcgccaagaggca
atgcaaagggcgcgcctaaaacagcaaaattcgtccaatgaaacgcaagcaacacctatc
tttcatcctacgaccccaactgagcagcgaagacagcgaatttgtaccgtttcaaccgac
ctcgtagcggcggttgcccagcgcaaaaatctcgcattggcatcggcaaaggcgagacag
gttgggattggtgctgatgcagctgccggacgatcatccactggagcgcaagttattaaa
aggatcgcaaacaccgtgccattaccgcatgctacgaaccacgtgcaaacaaagggagtt
gctcgagtggcccatgtagcgaaagcactgggccccagtgacaacccggtggcacccccg
cgcccaagaatacaatttgattcgaatatgaaggttcccgttaatctccgccaactgtca
ctggataagctgatcgatttaaataatatgatttgcaccacatatgaagaaagttacgag
aaatcactgaatgaagaacgtgacgtgtgtggccgcgcaaaggacagaagagtttattcc
aacctggtagccaaccttatcatgcgtctaaagaaggaaagcggtgagctgggtccttcg
agtacggccccacaggcagtttctcatgctgacgttcttggtggagcaaaagcaaaaaaa
atgtccttttcaatcgagaaacaccgcttccgcaggaatacctcggtagataatatgaca
gaagagcaattctacgaacatatgcgtgagaaataccttatgaagtcaacggaactcgac
caaatgggttttcctagaccatgcgaggggaaaccaggtaaagcagagtttcggcatgaa
gctgccctttcagctcctcctgacccacgtacgggcaacgaaagaacctgcgttcgatgt
aaaaaagtctattttgttgatagggatggaatgtacctacgacacgaagagtgcgtctat
cactggggcaaaaattggatgcgtcatgtgaaaagaagcaatgttcgtgagcaacagtac
acatgttgtgatgctgagagcggttctgacgggtgcagtgtggctaagggtcacgtattt
gataatccaatactcaaagaagacgggggctacatgacaaccctgactccggagcccgcg
gctgcaaacaattttaagaaggtgtacgcacttgattgtgaaatgatttacactacccga
ggcacggaacttgcccgtgtttcgatggtcgacatgaatcttcggactatctacgaaaca
aaagtgaagcctcgaaatcctgttcttgattacaacactcgattcagtggtcttaaaatg
gaggacctggaatcagtaacgacggaattacacgaggttcaggctgccatgctagccctg
gtctcagcagacacgatcttgataggacacagcctcgaatctgatttaaaagctctcaaa
tttatacattcgacagtggttgatacgtcacttgtcttccctcataagatgggcctaccc
tataaaagagcacttaaaaatcttctaaaggattactgccaaaagattattcaggatgga
gtggacggtcacgacagtgccgaggatgctaaggcctgtatggaactgatgctgtataaa
gtaaaacaagatctcaagtcggagtaa
DBGET
integrated database retrieval system
