Varroa jacobsoni: 111261629
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Entry
111261629 CDS
T07417
Name
(RefSeq) SWI/SNF complex subunit SMARCC2-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
vja
Varroa jacobsoni
Pathway
vja03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
111261629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111261629
03036 Chromosome and associated proteins [BR:
vja03036
]
111261629
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
111261629
Chromosome and associated proteins [BR:
vja03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
111261629
PBAF complex
111261629
GBAF(ncBAF) complex
111261629
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF919
Motif
Other DBs
NCBI-GeneID:
111261629
NCBI-ProteinID:
XP_022690978
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MSFQARKDGGPNVKFFESADTVQQFEAVKQWLVKQCKKYTQAEPPTAKSLAQLTVQMWQF
QEDALGKNSAKPRPLARLPVRVFLDLKSGGALCHLLAAAYKFKAEQGWRRFDFGSTNRHE
KNIEFFHMADRTLESQRLLDRPTVFVQDAKLKEIVRKLGGELTSSEDDATHIVRGPATQP
EDASETWVRAAQRKDNQVLVHFCQTPDSYDCWTEVEAESMELSPRPAEGQTYEVTTQWLL
DSEIYNEWMNPEDYDIDQENRRRCTIDELLCGKRKKSAAGKKRGRSPSPLGSKKSRKSKG
GRKDDLTKDMEDPSPEPALEKVEDGGLPPKSLNLAELVPEKKVMPEDIATEQANHIIVPS
YTAWFDYTAIHAIERRALPEFFNGKNRSKTPEIFMAYRNFMIDTYRLNPTEYLTVTACRR
NLAGDVCAVLRVHAFLEQWGLINYQVDADSRPTPMGPPSTAHFHVLVDTPSGLQTLNPPR
VNQPQSAATFGSSATGASATASGNGGAGSGSNSSTSLMVNLEAIKNDNSNDSTSGGSKDG
SKAAVASVSDKDAKDKDNKENSPVATKTEAGAGTGVQTIGDMLALKSDQYSNAAKKAALA
KQKTNRDWTEQETLLLLEGLEMYKDDWNKVCEHVGSRTQDECILQFLRLPIEDPYLEGDD
GGALGPLAYQPIPFSKAGNPIMSTVAFLASVVDPRVASSAAKAAMEEFAKIKDEVPSSLV
EQHLTNVIDKAVTENKEPVVDGELDRSGIAGTEKEAAKEPNSKDEEPMDTSERKENHNAE
DANDKEDTHDNDDERKKAHKEKLKADAQLSAAAAAALGAAAVKAKHLAAVEERKIKSLVA
LLVETQMKKLEIKLRHFEELEAIMDKERETLEYQRQQLIQERQQFHLEQLRAAEFRARQQ
AHAMMMAQQNQNNAPGGGNAASGNGGGNVRPNTVSGPSSGSGTGSGSNGSSPAPATGSGV
LLSASGGGSPGPIQGQQSNPVGASLSNTPPLQQHQQQQPPQQQQQPQPQGQLAASRAPES
STQPPVTTSTAAGNQE
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttccaggcacgtaaggatggaggacctaatgtcaagttttttgagtctgctgac
actgttcaacaattcgaagcagtgaaacaatggctggtaaaacaatgtaaaaaatatact
caagcagagccaccgacagctaagagtctcgcccaactcaccgtgcaaatgtggcagttt
caggaagatgcccttggaaaaaactcagctaagcccaggcctctagctcgtcttcctgtg
cgtgtgttcctggatctgaaatctggtggagctctttgtcatctgttagctgctgcatat
aaattcaaagccgagcagggatggcgtcgattcgattttggatctacaaatcgtcacgag
aagaacatagaattcttccatatggctgacagaacactggaatcacagagactacttgat
aggccgaccgtatttgtgcaggatgccaaactaaaggaaattgtccgaaaactgggtggt
gagttgacaagttctgaggacgatgcgacacacattgttcgtggtccagcaactcagccg
gaagacgcatccgagacctgggtacgggccgctcagagaaaggataaccaggttctagtt
catttttgtcagactcccgactcatacgactgttggaccgaggttgaggcagaatccatg
gaactgtctccaagacccgccgaaggtcagacttatgaggtaacgacgcaatggcttctc
gattcggaaatatacaatgaatggatgaacccagaagattatgatattgaccaagagaac
agacgcaggtgcacaattgatgaattattgtgtggtaaaagaaaaaagtcggcagccggt
aaaaagcgcggtcgcagtccgtcgccgcttggaagcaaaaaatctcgaaaaagcaagggt
ggaagaaaagatgaccttaccaaggatatggaagatccgtctcctgaacctgctcttgag
aaagtcgaggacggtgggctaccgcccaaaagcctaaaccttgcagaactggtaccggag
aaaaaagtcatgccggaggatatagcaacagagcaagcgaaccatattatagtgccctct
tatacagcatggttcgattacacagctattcacgcaattgaacgtagggccctgccagaa
ttctttaacggcaaaaatcgttcaaaaacccccgaaatatttatggcatacagaaatttc
atgatcgacacgtaccgcttaaatcctacggaatatttgacagtaacagcgtgccgacga
aacttagcaggagacgtgtgcgctgtacttcgagttcacgcatttctcgagcaatgggga
ctaattaattaccaagtagatgcggattctcgacccaccccgatggggccaccgtcaaca
gcgcatttccatgtacttgttgatacgccatccgggcttcagacattaaacccaccacgc
gttaatcagcctcaaagcgcggccacgtttggttcaagtgcgactggggcgagtgcaact
gccagtggaaatggcggcgcaggtagcggcagcaattcatctacttctctaatggttaat
ctggaagctattaaaaacgataattcaaatgactccacctcgggcggcagcaaggatggc
agcaaggcagcagttgcatcagtcagcgataaggacgcgaaggacaaggataataaagag
aacagtccagtagccacaaaaacagaagctggtgccggtactggagtccagactattggg
gatatgctcgccctgaaaagtgatcagtattcgaacgcagccaaaaaggccgcactcgct
aaacagaagaccaatagagattggacggaacaggaaacattgctacttcttgaaggatta
gaaatgtataaagatgactggaataaggtttgtgagcatgtgggcagtcgtacgcaagat
gagtgcatactgcagttcctaagacttcctatagaggacccctatctggaaggggacgac
ggtggtgctcttggtcccctcgcctaccaaccaatacccttttctaaggccggaaacccc
attatgtcaacggtggctttcttggcatctgtcgttgatccacgcgtcgctagttcggcg
gccaaagcggcaatggaagaattcgccaaaatcaaagatgaggtgccttcatctcttgta
gagcaacatctgaccaacgtgattgataaggccgtgacggagaacaaagagcctgtagtc
gacggagagctcgatcgtagcggtattgctggtacagagaaagaagccgcgaaggaaccc
aacagtaaagatgaggagccaatggatacatccgaacggaaagaaaatcacaatgccgag
gacgcaaacgataaagaagacacacacgacaacgatgatgaacgcaagaaagctcacaag
gagaagcttaaggctgatgctcaactttctgcagctgccgccgctgctctgggcgcagct
gctgtaaaagcaaaacatctagcagctgttgaggaacgaaagatcaagtcgctagtagcg
ctgcttgttgaaacccagatgaaaaaattagagattaagctgcgtcactttgaagaactt
gaggcgatcatggacaaggaacgggaaactttagaatatcaacgacagcaacttatacaa
gagcgtcagcagttccatcttgaacaactgcgagctgcggagttccgggcccgtcagcaa
gcccacgccatgatgatggctcaacaaaaccagaacaacgctcctgggggaggaaacgct
gcatctggtaatgggggaggaaatgttaggcctaataccgtgtccggtccctcttccggg
agtggcacgggtagcggttctaatggtagcagtccagcccccgctacaggcagtggtgtg
ttgttgagcgccagtgggggaggttctcctgggcctattcagggtcaacaaagtaatcct
gtcggagcatctttgagtaacactccaccattgcaacaacaccagcagcagcagccgcca
cagcagcaacagcaaccacagccccaaggacaattagctgcttctagagctccggaatcg
tctacacagccgccagttactactagtacagctgcaggtaaccaggaataa
DBGET
integrated database retrieval system
