KEGG   Varroa jacobsoni: 111262039
Entry
111262039         CDS       T07417                                 
Name
(RefSeq) replication factor C subunit 2-like
  KO
K10755  replication factor C subunit 2/4
Organism
vja  Varroa jacobsoni
Pathway
vja03030  DNA replication
vja03410  Base excision repair
vja03420  Nucleotide excision repair
vja03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:vja00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111262039
   03410 Base excision repair
    111262039
   03420 Nucleotide excision repair
    111262039
   03430 Mismatch repair
    111262039
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:vja03032]
    111262039
   03036 Chromosome and associated proteins [BR:vja03036]
    111262039
   03400 DNA repair and recombination proteins [BR:vja03400]
    111262039
DNA replication proteins [BR:vja03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111262039
  DNA Replication Termination Factors
   ELG1-RFC complex
    111262039
Chromosome and associated proteins [BR:vja03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111262039
DNA repair and recombination proteins [BR:vja03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111262039
  Check point factors
   HRAD17(Rad24)-RFC complex
    111262039
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 nSTAND_NTPase5 AAA_lid_RFC1 Rad17 RCF1-5-like_lid AAA_14 AAA_16 RuvB_N Mg_chelatase AAA_18 AAA_19 nSTAND3 Viral_helicase1 AAA_5 AAA_11 NTPase_1 ABC_tran DNAX_ATPase_lid MeaB AAA_24 MipZ IstB_IS21 MCM SRP54 AAA_assoc_2 AAA_2 KTI12 AAA_29 AAA_25 AAA_33 RNA_helicase AAA_30 AAA_3 AAA_28 cpSF2-GREB1 CbiA
Other DBs
NCBI-GeneID: 111262039
NCBI-ProteinID: XP_022691744
LinkDB
Position
Unknown
AA seq 328 aa
MANESPWVEKYRPEKFTEIVGNEETVARLEVFSRQGNMPNIILCGPPGVGKTTTILCLAR
LLLGNSFKDAVLELNASNDRGIDVVRNKIKMFAQTKVTLPRGRHKIIILDEADSMTEGAQ
QALRRTMENYSKTTRFALACNTSDKIIEPIQSRCAVVRFGKLNDAQILAKVIDVCRKENI
SYTEDGLEAIVYTAQGDMRQAIGNLQSTHVGFGHVNAKNVFKVCDEPHPLIIKEIIEFCS
KGDIDEAYTRMKTLYSLGYAAEDIISNMFRVTKSHQGLAEFVKLEFVKQIGLTHMTILQG
LGSLLQLSSLLANLCLIVQDKKPTIVLV
NT seq 987 nt   +upstreamnt  +downstreamnt
atggctaacgagtcaccatgggtagaaaaatatcggcctgagaaatttacggaaatcgtc
ggtaatgaggaaaccgtagcacggctggaagtcttctcgcgacaaggaaatatgccaaac
attatcctttgtggcccccctggcgtgggtaaaactacaactatactttgcctggcacgc
ttgcttcttgggaactcgttcaaggatgccgtgctcgaactgaatgcttcgaacgatcgt
ggaatcgatgttgttcgaaataagattaaaatgtttgctcaaaccaaggttacattacca
cggggtcgacataagattatcattctcgacgaggccgattccatgacagagggcgctcag
caggcattaagacgcacaatggaaaattattctaaaacgacccgtttcgcattagcttgc
aacacgtcagataagattatcgaacccattcagagtcgttgcgctgttgttcgatttgga
aaacttaacgacgctcagattcttgctaaggtgatcgatgtgtgcagaaaggaaaatatt
tcgtacaccgaagacggcctggaggcaatcgtctatacggcccaaggcgatatgcgccaa
gcaattggtaaccttcagtcaacacatgttggcttcgggcacgtcaatgcaaaaaatgtc
ttcaaagtgtgcgatgaaccccatccgctcattatcaaagagataatcgagttttgctca
aagggcgatatcgacgaagcatacactcggatgaaaaccctttactccttaggctatgca
gcagaagatatcatatctaacatgttccgcgtgacaaaatctcaccaaggattagccgaa
tttgttaagctggagtttgttaagcaaatcggcctaactcacatgactatcctacagggg
ttaggatcgttgctacagctttcttcgcttctagctaatctttgccttattgttcaggat
aaaaagccgacgatagtcttagtgtaa

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