Varroa jacobsoni: 111262339
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Entry
111262339 CDS
T07417
Name
(RefSeq) uncharacterized protein LOC111262339 isoform X1
KO
K14323
protein CASC3
Organism
vja
Varroa jacobsoni
Pathway
vja03013
Nucleocytoplasmic transport
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111262339
03015 mRNA surveillance pathway
111262339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111262339
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111262339
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
111262339
NCBI-ProteinID:
XP_022692300
LinkDB
All DBs
Position
Unknown
AA seq
1487 aa
AA seq
DB search
MSFFTKLSSLVRNNSINKDGPTSDDLATEKKRNKVDSEKRKTAEADITSKEVVSKADNEN
KSDGTGSGSYENEDNEVGVAATSPIETYDKKGQNVSSITTTTTELTSSKVSAKDDKEANT
LQAAVTSSLLAIEKNNQKDKIQEEIVAPIVVERNEVQKIILKSSRSRSATESDKWGASAT
LEIISTHSEVEDTAADKVVTSSSKTPLVQVSKTETDNKKNVLSPSTPVIDTVTENSKEQN
GQKEDSDAALSKSLLDGVADAHKKYSVEGPEDSLEQKPTISCETRNDLTTVNDNVLLHLK
TEQVPVKTLSARQTDERDDAAPVNYLSVDLRSVDLTAEDKRATADNSGACIERQKQNADP
ASYGVQKKFTSEDVLEQAHTDELCGVTAKREELLPTETLAHKSELLTGKSAEEFIRQTIK
LQSACKTTSPSGEMDDKSKTETTESGTQSTSSTAIEDSKQQKTEQSARSNAEQETAAAPA
TPNNLKIVKKLADDGDTANRLAEEKKVELSFNEAVAEKENVTDGKQTSKDEKTDLISVEQ
ISSVQAIKEASHLIESENVGAAVLITESTEPATVKVFEPKSESVKDNTEPEGGNTKKKSE
PEEKSLKEKTSVVTENENQKPAAHTLGGSPKFAEAVKDEAAVDEGIVENGAEDDGEHSSD
FTDEEVEPPETESQKSVAASGDAGSNNRKAEPDGNHDEAHDDEDVGEDLDFDEDKRNPQY
IPKKGAFYEHDDRRGTDDESDEDTTGGARGEDGLKAGDGTESGAGGAGGIGGRGDSPELC
GRGGRAPKVLQSETRDRWEHDLYDASEQGPKSVDELIAQYGYDIRDESAAPRAARRRKYG
RGPNKYSRDWQDEKAYHSRATHGGQERHERHTGREGGRGDNNKEYHPRKDDFPCLNTASQ
QQQQQQPQQHASKDKDHERENRDHGGASRSERGDTRDNRREKDAPRRSDGGNKHEVQRRE
LPKKDLRHKLDNNRNNDRFDSRGDNRRDNRGGQRDIFGDSHNGHSRGGGDSYRDNYRDSN
NYRDSRDNYSRDNNRTGGGDGHGYRDSRDGGYRDRADRDRERDRDGGNTRDQRADSSYRG
NNNRSDNNGRDSGYNQSRSDNNHRENWREGRDSYRENFHRDHAGGDTGHRENFQKDGSSR
GGSDVRDIRGGNRSDPGRKIGSGRTQDPRAIRKGQQQHQQQTQLQQQPHQMHQQQQHEPT
TNNNNNNNINNISGGSTGHQGKTGDAALDRKIVDEKRQHQQHIQQQNATNVSENKRYTAQ
RAATRAEYGANQVPASQSQPLPPQPQHHAPATHQPMASTHPHSNHNPPPPPHAGQQHPAY
YEVAPPHGHPPPGASYFVSQAFDSGAVPTGAPPQGFAPAPFMGPPPPFITSQTHAAPFMM
GGPVAPDGSVHHGPPHGHHHPKAQLIPPNGGITYFSPQQQMYISHQQKPPQPRPKAIIPI
VPPPDAANHKNSNASAVASGGNPAGNSSGGGQGGPEPGAAAPAQVEA
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcttcacgaagctctcttccctcgtccgtaacaactccatcaacaaggacggt
ccaacgagcgatgacctcgcaaccgaaaaaaagcgaaataaagttgattcagaaaagaga
aaaacagcagaggctgatataacctcaaaggaagttgtcagtaaagcagacaatgaaaat
aagtcagatggtacaggttctggcagctatgaaaatgaagacaatgaggtcggggtagcg
gctacttcacccatagaaacttatgataagaaaggccaaaacgttagctcaataacaaca
acaacaacagaactgacgtcttctaaagtttcggctaaagacgacaaagaagcgaatacg
cttcaagcagcggtcacatcctctttacttgctatagagaaaaataaccagaaagacaaa
atacaggaagaaattgtcgcacccatcgttgtcgaaaggaatgaagtacagaaaattata
ctaaagtcgtcgcgttcaagaagtgctactgagagtgacaagtggggtgcatctgcaacc
ctggaaatcatttcgacgcatagtgaggtggaggatactgcggccgataaagtcgttaca
tcatcctctaagactcctcttgttcaagttagcaagacagagactgacaacaagaagaac
gtactgtcgccatctacacccgttatcgatactgtaacagaaaactccaaagaacaaaac
gggcaaaaagaagatagcgatgccgctttgtcgaaatcgctcctagacggtgtcgctgat
gcccataagaagtacagtgtagaagggccggaggacagtttagagcagaagcctactatt
tcgtgtgaaacacgtaacgacctcacaaccgtaaacgataacgtactgcttcatttgaag
acagagcaagttccagtgaaaacactttctgccagacaaactgatgagagggacgatgcg
gcgcctgtgaattacctatcggtagacttaaggtcggtagatttaacggcagaagataaa
cgggccactgccgataattctggagcatgcatcgaaagacaaaagcagaatgccgatcct
gctagctacggagtacagaaaaagtttacatctgaagatgtactcgaacaagctcacacc
gacgaactttgtggagtaacagctaaacgagaagagttgttgccgacagaaactctagcg
cataaatcagaactgcttacaggaaaaagtgctgaggaatttataagacagacgattaag
ttacagtccgcttgcaaaactacttcaccctctggtgagatggacgacaaatcaaagacg
gagaccacggaaagcggtacacagagtacttcctctacagcaattgaggatagtaaacag
caaaaaacagaacaatccgctagaagcaatgctgaacaagaaacagcagctgctccagct
acacctaataatctaaagatcgtgaaaaaacttgcagatgatggtgacactgcgaaccga
ttagcggaggaaaagaaagttgaattgagtttcaacgaagccgtagcagagaaggagaat
gtgactgatggcaaacagacgtcaaaggatgaaaaaactgacctgatttcggtggagcaa
ataagctcagttcaagctatcaaggaagctagtcatttaattgagtcagagaacgtcggt
gcggctgtactaattactgaaagtacagagcccgcaactgttaaggttttcgagcccaaa
agtgaaagtgtaaaagacaatactgagcctgaaggcggaaatacaaaaaagaaatctgag
cctgaagaaaaaagtctcaaagagaaaacttcggtggtaaccgaaaatgaaaaccagaaa
ccagctgcccatacgttgggcggatcgcctaaatttgccgaagctgtcaaagacgaagca
gcggttgacgagggaattgtagaaaatggggcggaggacgatggcgagcactcgtcagat
tttacagacgaagaagtagagccccccgaaactgaaagccagaaaagtgtggcggcttcg
ggcgatgccggtagtaacaacaggaaagcagaacctgacggaaatcacgatgaagcacac
gatgacgaggatgtgggagaggatctggacttcgacgaggacaagagaaatccgcaatac
atcccgaagaagggtgccttctatgagcacgacgatcgtcgcggaactgatgacgaaagc
gatgaagatactaccggtggtgcaagaggtgaggatgggttgaaggcaggcgacggaacg
gagtctggagccggcggtgcgggaggcatcggcggacgtggcgatagccccgaactttgt
ggtcggggtggtcgagccccgaaagtacttcaaagtgagacccgtgaccgttgggaacat
gacctgtacgacgcctcggagcagggacctaagagtgtagacgagctgattgcgcaatac
ggttacgatatccgcgacgagtcagcggcgccgcgcgctgctagacgccgtaagtacggc
cgtggtccgaacaagtatagtcgggattggcaagacgaaaaggcctaccacagccgggct
acccacggcggccaggagcgccacgagcgtcataccggcagagagggaggaagaggggat
aacaataaggaataccacccacggaaggatgatttcccttgtttgaacactgcatcacag
cagcagcagcagcagcaaccacaacaacatgcctcgaaggataaggatcatgaaagagag
aatcgagaccacgggggggcaagccgaagtgagcgtggagatactagagataatcgccgt
gagaaggatgccccacgccgaagtgacggcggcaacaaacacgaagtacagagaagagaa
cttcccaaaaaagacctgagacacaaattggacaacaaccgaaataacgatcgtttcgat
tcgcgtggcgacaaccgtcgggacaatcgaggaggtcagcgtgatatctttggagatagt
cacaatggtcattcgcgtggtggtggtgatagttatcgggataattaccgcgatagcaac
aattatagagattctcgtgataattattcaagagacaacaatcgtacgggcggtggagat
ggtcacggttaccgggattctcgcgatggcggttaccgagatcgggcggaccgtgaccgt
gaacgcgatcgtgatgggggtaacacgcgggaccagagagcggatagcagctatcgcggc
aataacaatcgttctgataacaacggaagggattccggctacaaccagagtcggagtgac
aataatcacagggagaattggcgggaaggtcgcgattcgtaccgcgaaaacttccatcga
gaccatgcaggaggagatacgggccatcgcgagaactttcagaaggatggcagtagtcgc
ggaggatccgatgttcgggatatacgaggaggcaatcggtcggatcccggcagaaagatc
ggctcaggaagaacacaagatcctcgagcaatccgaaaggggcaacaacaacatcaacaa
cagacacaactacaacaacagccgcatcaaatgcatcagcaacagcaacatgagcctact
acaaacaataacaacaacaataatattaataatatatctggtggatcaacagggcaccag
ggaaaaactggggatgccgctcttgaccgaaaaatcgtcgatgaaaagcggcaacatcaa
cagcacattcaacagcaaaatgctacaaatgtgagtgaaaacaaacggtatactgcacaa
agagccgctacaagagcggagtacggtgcaaatcaggtaccggccagccaatcgcaacct
ctgcctcctcagccgcagcatcacgcgcctgctacccatcagcctatggcatcaacccat
cctcattctaaccataatccgccaccaccgcctcatgcaggacagcagcatcccgcctac
tatgaggtggcgccaccccatggccatccgccccctggggcgtcctacttcgtctcgcag
gcgtttgattccggtgctgtaccaacgggagcaccaccgcaaggatttgcgcctgcaccg
tttatgggtccaccaccgccatttatcacttcgcagacacacgctgctccgttcatgatg
ggcgggccggtggcccccgatggctcagtgcaccatggtccaccccatgggcatcaccat
cccaaagcacagctgattccaccaaacggtggaattacgtatttctcaccacagcagcaa
atgtatatctcgcaccaacagaagcctccccagccgagaccgaaggcaatcatacctatc
gtaccacctccagatgcggccaatcataagaattcaaacgcatcagctgtcgctagcgga
ggcaatcctgctggaaattcttctggtggaggacaaggcggccccgaacctggcgcagct
gcgccagcccaggtagaagcctaa
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integrated database retrieval system
