Varroa jacobsoni: 111262399
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Entry
111262399 CDS
T07417
Name
(RefSeq) superkiller viralicidic activity 2-like 2 isoform X1
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vja
Varroa jacobsoni
Pathway
vja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111262399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111262399
03041 Spliceosome [BR:
vja03041
]
111262399
03009 Ribosome biogenesis [BR:
vja03009
]
111262399
03016 Transfer RNA biogenesis [BR:
vja03016
]
111262399
Enzymes [BR:
vja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111262399
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
111262399
Spliceosome [BR:
vja03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
111262399
Complex C
U4/U6.U5 tri-SnRNP related factors
111262399
Ribosome biogenesis [BR:
vja03009
]
Eukaryotic type
Pre-60S particles
Helicases
111262399
Transfer RNA biogenesis [BR:
vja03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
111262399
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ATPase_2
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
111262399
NCBI-ProteinID:
XP_022692366
LinkDB
All DBs
Position
Unknown
AA seq
1024 aa
AA seq
DB search
MEDLFSVFENAGASEATQESKKDDGKEVAKLPKDDPTDLVSAILEGDKNKLPETEGPVKK
KPRILEDYNPDEYASRSTIHRVDTVDSCSHEVAVPSGSEFVPLEVKPGPPAREYPFVLDP
FQREAILCIENEQSVLVSAHTSAGKTVVAEYSIALALKNKQRVIYTTPIKALSNQKYREF
YEEFKDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVGWVIFDEIHYMRDKER
GVVWEETIILLPDNVHYVFLSATIPNARQFAEWICYLHKQPCHVVYTEYRPVPLQHYIFP
AGGDGLHLVVDEKGIFKEDNFNLAMTTLQNAAGNAKGDSGLRGRQGGFRSETNCYKIVKM
IMERDYSPVIVFSFSKRECESYATQMSKLDLNTADEKKLVNEVFNNAMEALSDEDRELPQ
VQQVLPLLMRGIAIHHGGLLPILKETIEILFSEGLIKALFATETFAMGLNMPARTVLFTN
PRKFDGQNFRWVTSGEYIQMSGRAGRRGLDDRGIVILMIDEKMSAQAAKDIVKGAPDAIN
SAFHLTYNMVLNLLRVEGINPEYMLERSFFQFQNYASIPQLYQRLDALQEQLDAMVINRE
DDVATYFKVQQQLTKSQAELRGYITKPQHIVPFLQAGRMIRVKNKNDDFGWGIIINYKNK
KVQTKQKHSNLLEEEDVQVIVEALIYVCPGSTEVESIKPPPKGVKGEMQVVPIRLDLIER
ISSVRLLYPSDLRPLDSRMSVLKSINEVEKRFDKEVPLLDPIEDMDIREAPVKELVKQIA
ALKERLRSLPLHTEPGLDALYKAYSAKQQVAEQVKQCKADIRKGKSLLQMDELKCRKRVL
RRLGYCNNADIIDVKGRIACEISTADELLLTEMIFNNIFNNLNPAQCNAVLSCLVFQEKS
NEMPKLTEELMQPLRLMQDMARRIAQVSRDSKLELDEDDYIDQFKPHLMDVVFGWSKGAS
FGQICKMTDAFEGSIIRCVRRLEELLRQMVQAAKSIGNTELETKFSEAIKLIKRDIVFAA
SLYL
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atggaggatctttttagtgtttttgagaatgccggcgcttccgaagctactcaggagtcc
aaaaaggatgatggcaaggaagtggctaaattgcccaaggatgacccgacggatctcgtt
agcgctatcctagaaggtgacaagaataagctgcctgagacagagggaccagtaaaaaag
aaaccaagaatcttagaggattacaatccggatgagtacgcgtctcggagtaccattcat
cgtgttgatacggtggactcttgctcgcacgaagtggctgttccatctgggtcagaattc
gtaccacttgaagtgaaaccgggccctcctgcacgcgagtatccgtttgttcttgaccct
ttccaacgggaagccatcctatgtattgaaaatgaacaaagcgtcctcgttagcgcacac
acatctgctggaaaaacggtggtggccgagtactcaattgccttagctttgaaaaacaaa
caacgtgtcatttacacgacgccgatcaaggctttatccaatcagaagtaccgagaattc
tacgaggagttcaaggacgttggtctcatgacaggcgacgtcaccatcaacccaacagcg
tcttgccttattatgacaaccgaaatcttgcgttcgatgttgtatcgaggcagcgagatc
atgcgggaggtcggctgggtcattttcgacgagatccactacatgagagacaaggaacgt
ggtgttgtatgggaagaaacaattattcttcttcctgacaacgtccattatgtgttctta
tcagcaactatccccaatgcgcgccaatttgctgagtggatctgttatctacataagcag
ccttgtcatgtcgtctatacggaatataggccagtgccacttcaacattatattttccct
gctggaggcgatggacttcatttggtggtcgatgagaaaggtatcttcaaggaagataac
ttcaacctcgctatgacaactctgcagaatgccgctggtaacgccaaaggtgatagtgga
cttcgtggccgacaaggcggtttccgctcagagacaaactgctacaaaatcgtcaagatg
attatggaacgtgactacagcccagtgatagtatttagcttctcgaagagagagtgcgaa
tcttacgcgacacagatgagcaagctcgacttgaatacagccgatgaaaaaaaacttgtt
aacgaagtattcaacaatgccatggaggcgctttcggacgaagatcgtgagcttccacaa
gtgcaacaagttctaccgctcttaatgcgaggtatcgccatccatcacggcggtcttctg
ccgattttaaaggagaccattgaaattctttttagtgagggcctgattaaggcattgttt
gctacggagacgtttgcaatggggcttaatatgccggcccgaacggtgttgttcaccaat
ccacgaaagtttgatggacagaatttccgttgggttacgtccggtgaatatattcagatg
agtggaagagctgggcggcgaggtcttgatgacagaggtattgttattctcatgatcgat
gaaaaaatgagtgcccaagctgccaaggatatcgtgaaaggagctccggacgcgataaac
tccgcttttcaccttacctacaacatggttctcaatcttcttcgtgttgaaggaattaac
ccggaatacatgctggaaagaagttttttccaatttcagaactacgcctcgattccacaa
ttgtaccagagactagacgccctacaggagcagcttgacgcaatggtaataaaccgcgaa
gatgacgttgccacgtacttcaaagtccaacagcagctgaccaaaagtcaagctgagctt
cgcggatatataacgaaaccacagcacattgtgccttttcttcaagcaggccgcatgatt
cgagtgaagaataaaaacgacgactttggatggggaattatcattaactacaaaaataag
aaggtccaaactaagcagaagcattcaaacttgttggaagaagaggatgtacaggttata
gtagaagcgttgatttacgtatgtccaggatcaacagaggtcgaatcgatcaaaccgcct
ccaaagggtgtcaaaggcgagatgcaggttgtgccgatccgattggatctcatcgaacgg
atatcttcagttcgtcttctctatcccagtgacttgcgaccgcttgacagtcgcatgagc
gtcctgaaatcgatcaatgaagttgagaaacgctttgacaaggaagtgccgctgctggat
ccaattgaagatatggatattcgagaggcacctgtcaaggagcttgtaaagcaaattgcc
gcattgaaagaacgattgcgaagcttgccgctgcacaccgaaccgggtttggatgcccta
tataaggcatattcggccaagcaacaggtggctgaacaggtcaaacagtgtaaagctgat
attcgaaaaggcaaaagtcttctacagatggatgagctaaaatgccgcaaaagagtgctc
cgacgacttggttattgcaacaacgctgacattatcgatgttaagggtcgcatcgcatgc
gagattagcactgctgatgaacttttattgacggagatgatcttcaacaacatcttcaat
aatctaaatcccgctcagtgcaatgccgtattgtcgtgccttgtgtttcaagagaagagt
aatgaaatgccgaagctcacagaggaacttatgcagccgctcaggctaatgcaggatatg
gccagacgaatcgctcaggtgtcacgtgactcaaaactggagcttgacgaagatgattat
atcgatcagtttaagccgcatttgatggatgttgtgttcggatggagtaaaggtgcgtca
tttgggcaaatctgcaaaatgacagacgcttttgaaggctcgattattcgatgcgtgcga
cgactcgaggaactgctccgtcagatggtgcaggcggccaagagcataggaaacacagaa
cttgaaacaaagttcagtgaggcgataaaactcatcaaacgtgatatcgtctttgctgcg
tcgctgtatttgtaa
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integrated database retrieval system
