Varroa jacobsoni: 111263433
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Entry
111263433 CDS
T07417
Name
(RefSeq) endoribonuclease dcr-1-like
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
vja
Varroa jacobsoni
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
vja03036
]
111263433
Chromosome and associated proteins [BR:
vja03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
111263433
microRNA pathway
RISC loading complex
111263433
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Dicer_dimer
ResIII
Helicase_C
Dicer_platform
Dicer_dsRBD
Cas3-like_C_2
dsrm
nSTAND3
Motif
Other DBs
NCBI-GeneID:
111263433
NCBI-ProteinID:
XP_022694219
LinkDB
All DBs
Position
Unknown
AA seq
1446 aa
AA seq
DB search
MAEAKRYEHAARDYQVEILEKTLEQNVIICLGTGSGKTFISVMLIKELLYETYSCFEAGG
KRSVFLAPTVSLAKQQVNYLKKFLDAEIGVYVGLDVDLWTKAVWTVEFSAHNVLVMTPQV
FLNILNFNYVQLSSVNLLVLDECHAASGKAPYVQIMQNHYKDLEEGKRPKILGLTASVLN
RKVKPTSVQKEVRELCSRLNSKIVTSVDAISYGTKPTEIIVSYNEIPPVQIQVRVSPCDA
SVFCAPNGENSLVAQIERLLGEVGPFGALKSIEHRIHITKNLLENSLAESHVIDTYKTIL
VSLERVEASLKAWSTNVRCGFQKNQYPVVIPPDLRNILVDPLQYSFPPKVHRLLEMFRSF
ERSNITLCCVVFAQERYTVFSLWCVLSMLSRRCPNRYGYIRPGFIMGQGIMSQFSNTQSK
IMNFVDERETTDSDQHVLNDFREKRLNVLVATAVIEEGIDIPNCNLVVRFNEPINLRSYV
QSRGRARSRPSVYAVMCPRNTVHKMSVALQQLKESELNVLVLCLQDNMDIDSADMEKALR
DDPDLPTLFAFPNKPRDSAIITAQSARTILQWYCDLLSDDRFKVLKPKFQYTTIKSDAYG
HKIRCKIELPRESKLFGQQIYGKFLENKIKAKISAALEACKRLYDVGELTENLIPKRRPP
ANTYEWTDEEVSDEIKALFKNNTITQDSSITCGRAQASQLKTCPIPRLPACAKVFAFRIT
LHEPFVDENYHGRIFNVGNEPLCFGILTFNTEDVGTIPDFPLFTKAGVETVRVEQIHDVF
ITEVQWSICSLFHRYMVTRVLRIAGVECDPFAAPAIVPISGNKLNYTLMNMLKNSTDFTL
SIDSVVTVTSELNERETKRSYFVGELFQEDGMLTVSLLGMPRNIDYVACHHRVKTMYKEE
TPDAIKRRYAKHGNDICVELLTASQWSKGLSVASCLYRLNRLLVAENIRMNIVHAGIGKA
IQEASSMRYERLSNDSRSFRSKDNIRLDGITFILDEPIDSSGPSAIDIYTALSPRSANDI
VDSERYEVIGDSYLKLVVTLDLFGRFDSKDEGYLTQQRCRLVSNMHLVTLAVPHKIQDAV
ESLQFCARANFLLPGCKTADGHQDMIVQKYKSKICADSVEALIGVYLEKSGANGALNFLN
YLGLKLDCRTSGSFVSRFNLSSWTEPEAELVSRYLPRFKRQLYEVQTILDYQFSKPLLLL
EAITHQSYTRNCLTRSYERLEFLGDAVVDYLVSRYLYYNCPQLSPGELSNSRAALVCNTT
LARAVTNHQLHKHLLHQSPVLLRLTECYLAALEKGVLDEVLICEDDSDDASAVDVPKPLG
DLFESLIGAVFLDTAMNFERTWIVFRRLIGDDVIRNYLTDIPRHPVTMLMEIYPNMVTYG
KIEILENKRVRLEMSVMNERFTVTARNKKVARITLAKKALRHFDQVKQCGKDFLGAMERI
AKELQL
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atggccgaagctaaaaggtacgagcacgcagcccgcgactaccaagtagagattcttgag
aagacgcttgagcagaatgttatcatctgccttggcaccggctccgggaagacctttata
tcggtaatgcttatcaaggagcttctatatgaaacatactcatgctttgaggcagggggg
aaacgaagcgtctttcttgcaccaaccgtatcattggcgaagcaacaagtaaactacttg
aagaaatttctagacgccgaaattggcgtatacgttggattagatgtagacctatggaca
aaagccgtatggacagttgaattttcggctcacaatgtgctcgtaatgactccgcaggtg
tttcttaacattctcaacttcaactatgtccaactctccagcgtcaacctgctggtccta
gatgagtgtcacgccgcaagtggcaaggctccctatgtccagatcatgcagaaccattat
aaggaccttgaagagggaaagcggcctaaaatacttggcttgacggcatcagtgcttaat
cgcaaggtcaaaccaactagcgtccagaaggaagtgcgcgaactctgctctcgtcttaac
tcaaaaatagtcacttcagtcgatgcgatcagttacggtacaaagccaactgagatcatc
gtaagctacaacgaaattccacctgtgcaaatccaggtccgtgtatctccttgtgatgct
agcgttttttgtgcgcctaacggcgagaactccttggtagcacaaatcgagcgtttactc
ggagaagttggaccgtttggtgctttaaagtctatagagcatcgaattcatattactaaa
aatttactcgaaaattcattagctgagtcacacgtaatcgacacatacaaaactatttta
gtgagtcttgagcgcgtagaagctagtttgaaagcgtggtcaacaaacgtacgatgcggc
tttcagaagaatcaatacccagtggtgattcctcccgatctgcgaaatatactcgttgat
ccattacagtattcgttcccaccaaaggtgcatcggcttcttgaaatgttccgttcattt
gaaaggagtaacataacgctatgttgtgttgtctttgcccaagagcgttacacagtgttc
agcctgtggtgtgtgttatcaatgctaagtcgacgctgcccgaaccggtatggatacatt
cgcccaggatttatcatgggccagggaattatgtcacaattcagcaatacccagtcgaag
atcatgaacttcgttgatgaacgcgaaacaactgatagcgaccagcacgttcttaatgat
tttcgagaaaaacgacttaatgttcttgttgccacggcggttattgaagaagggatcgat
atccctaattgtaaccttgtcgtccgtttcaatgagccaataaatctgcgaagctacgtt
cagagccgagggagggcacgaagtaggccgtcagtttatgccgtcatgtgtccaaggaat
acggtccacaagatgtcagtagctctacagcaattaaaggagtctgaacttaacgtattg
gtgctttgcctgcaagataatatggatattgatagtgccgacatggaaaaggcacttcgc
gatgacccggacctgccaacattgttcgcctttccaaacaagccacgtgattcagcgatc
atcaccgcgcagtcggcacgtactatcttgcaatggtactgtgatctgttaagcgatgac
cgtttcaaagttttaaaacctaaatttcaatatacgaccatcaaaagtgatgcttatggc
cacaaaatacggtgcaaaatcgaactccccagagagtctaaactttttggccaacaaata
tatggaaagtttctcgaaaataagataaaggcgaaaatttctgccgcgttagaagcgtgc
aagcgactgtatgatgtcggtgaactcacagaaaaccttataccgaaaaggagacctccg
gctaacacgtacgagtggaccgacgaagaggtctcagatgaaatcaaagctcttttcaag
aacaatacgatcacacaagactcttcaatcacctgtggcagagcccaagccagtcagttg
aagacttgcccaattccaagacttccggcttgtgctaaagtgtttgcctttcgcatcact
cttcatgagccattcgtcgatgagaattatcatggaagaatattcaatgtgggaaatgag
ccgttatgttttggtattctcacatttaacactgaggatgtgggaacaatccctgatttc
cctttgtttactaaagcaggcgtggaaacagtgcgcgttgaacagattcacgacgtattc
atcacagaggtacagtggagtatatgcagcttatttcatcgatacatggtgacgcgtgtt
ctccgcattgctggggttgagtgcgatccatttgccgcccctgctatcgttccaatttct
ggtaacaagttgaattatacattgatgaatatgctaaaaaactccacggattttacttta
agtatcgattctgtagttaccgttaccagtgagctaaatgaacgagaaacaaaaagatcc
tacttcgtgggggaactttttcaagaagatggcatgttaacagtatctctgctgggtatg
cctagaaatattgattacgtcgcatgtcaccatagagttaaaacgatgtacaaagaggaa
acacccgatgcgattaagcgaagatacgccaaacacgggaatgatatttgtgttgaactg
ctgactgcttcacagtggtccaagggactttctgtagcatcatgtctgtatcggctcaac
cgactattagttgctgaaaatatccgaatgaacattgtacatgccggaattgggaaggcg
attcaggaagcaagttctatgagatacgaacgactttcaaacgattcacgatcgtttcga
tcaaaagacaatatcagattggatggtatcacctttattcttgatgagcctattgattct
tcgggaccttctgctatcgacatctatacagcgctttcgccacggtcggcaaatgatatt
gttgactccgaacggtatgaggtaattggagactcgtatcttaaacttgtggtcacccta
gaccttttcggcaggtttgattcaaaagatgaaggatatttgactcaacaacgatgccgc
ctcgtgtctaacatgcatctcgtgacccttgccgtaccacacaaaattcaagatgcagtg
gaaagcctgcagttctgtgccagagcaaacttcttgctgccgggatgtaaaacagctgac
ggtcatcaggatatgatcgtacagaaatacaagagcaagatttgcgcagattccgtcgaa
gcgttaataggtgtgtatcttgaaaagtctggagctaacggagcactaaattttctgaac
tatttaggtctgaagttagattgtagaacatctggctcgttcgtctcgaggtttaatctt
agctcttggaccgaacctgaagctgagcttgtatctcgttatttgccgaggttcaaacgc
caattgtacgaagtgcaaacaattttagactatcaattttcgaagccattactgctattg
gaagctatcacccaccaatcctatacacgcaattgtttgacgcggtcctatgagcgactc
gaatttctaggcgacgccgtcgtcgattatttggtgtcacgttatctatactataattgc
cctcagcttagcccaggcgagttgagcaactcccgtgcagccctcgtttgcaacactacg
ttagctcgcgccgtcacgaatcaccagctgcataagcacttgctccatcagtcgcctgta
cttctcaggctgactgaatgctatttggcggcgttggagaagggcgttttggacgaggta
ctcatttgtgaagatgattcggacgacgctagcgctgtcgatgtgccaaaacctcttgga
gatctgtttgaaagcctaataggcgcagtttttctcgacactgctatgaattttgagcgg
acatggattgtgtttaggagactaataggggatgacgttattcgaaattatttaactgat
ataccgcggcatcctgtaactatgctcatggaaatataccctaatatggtcacatatggc
aaaatcgaaattcttgaaaacaaacgagttcgtcttgagatgagtgtcatgaatgaacgt
ttcaccgtaactgcacgcaacaagaaagttgcccgaattacactagctaagaaagcgctg
cgccacttcgatcaagtgaaacagtgcggaaaagattttcttggggctatggagagaatc
gcgaaggaactacaactctga
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