Varroa jacobsoni: 111263559
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Entry
111263559 CDS
T07417
Name
(RefSeq) spliceosome RNA helicase DDX39B-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vja
Varroa jacobsoni
Pathway
vja03013
Nucleocytoplasmic transport
vja03015
mRNA surveillance pathway
vja03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111263559
09122 Translation
03013 Nucleocytoplasmic transport
111263559
03015 mRNA surveillance pathway
111263559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111263559
03041 Spliceosome [BR:
vja03041
]
111263559
Enzymes [BR:
vja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111263559
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
111263559
Spliceosome [BR:
vja03041
]
Complex C
Other components
EJC/TREX
111263559
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
111263559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Utp25_C
DUF3256
P-loop_SecA
Ned1_M
AAA_19
Motif
Other DBs
NCBI-GeneID:
111263559
NCBI-ProteinID:
XP_022694473
LinkDB
All DBs
Position
Unknown
AA seq
435 aa
AA seq
DB search
MADTDLLDYEDEEEQTTTQTPAAAAGDAAVVGDTGAGKEVKKPAGGYVSIHSSGFRDFLL
KPELLRAIVDCGFEHPSAVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVDG
EVSVLVMCHTRELAFQISKEYERFSKYMTGVRVGVFFGGLAIANDEKTLKTACPHIVVGT
PGRILALVNTKKLSLKNIKHFVLDECDKMLDSLDMRRDVQEIYRNTPTEKQVMMFSATLS
KEIRPVCLKFMQDAMQVYVDNEAKLTLHGLQQYYVKLKDNEKNRKLFELLDVLEFNQVVI
FVKSVQRCMALSQLLAEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMD
IERVNIVFNYDMPENTDTYLHRVARAGRFGTKGLAVTFVSDGEDAKTLNDVQDRFDVSIL
ELPDEIDISSYIETN
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggctgataccgatctgctcgactacgaggatgaggaggagcagactacaactcaaacg
cccgcggcggcggcaggtgatgccgctgttgtcggggataccggggctggcaaagaagta
aagaagcccgctggcggttacgtatcaattcactcatcaggctttcgagatttcctcctt
aaaccggagttacttagggctatagtagattgcggctttgaacatccttcggccgttcaa
catgaatgtattccacaggcgatccttggtatggatgtattgtgccaggccaagtcgggt
atgggcaagacggctgtgttcgttcttgctactcttcaacagcttgagcctgtcgacggc
gaggtgtcggtgttggtcatgtgccacacacgcgagctggcgtttcagatctcgaaggag
tacgagcgcttttcgaagtacatgaccggcgttcgtgtgggggtattcttcggaggtctg
gccattgcgaacgacgagaagaccctcaagacagcttgtcctcacatcgtagtcggcacc
cccggacgcatcctcgcgcttgtcaacaccaagaaactctcgctgaagaacatcaagcac
tttgtgctcgatgagtgcgacaagatgctcgactcactcgatatgcgacgggacgttcag
gaaatctaccgtaatacgcccaccgagaagcaggtgatgatgttctcagctacgttgtct
aaggaaattcggcctgtctgcctgaaattcatgcaggacgccatgcaggtatacgttgac
aatgaagcaaaactcacacttcacggccttcaacagtattacgtcaagctgaaggacaac
gagaaaaaccgcaagctgtttgaacttcttgatgtactcgagttcaaccaagtcgtgatc
ttcgttaagagcgtacaacgttgcatggcgctttcgcagctgctagccgaacagaacttc
ccggcgatcgccattcatcgtgcgatgacacaagaggagcgcctttcgcgctatcaacaa
ttcaaagacttccaaaagcgtattctcgttgcgaccaacttgtttgggcgtggtatggat
atcgaacgtgtaaacatcgttttcaactatgacatgcctgagaatacggatacgtacctt
cacagagttgcccgagctggtcgtttcggtactaaaggtcttgcggtgacgtttgtgtcc
gatggtgaagacgccaagacactgaatgacgtacaggaccgatttgatgtcagcatcctg
gaacttcccgacgaaatcgacatctcctcatacattgaaacaaactga
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