Varroa jacobsoni: 111264684
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Entry
111264684 CDS
T07417
Name
(RefSeq) exosome complex exonuclease RRP42-like isoform X1
KO
K12589
exosome complex component RRP42
Organism
vja
Varroa jacobsoni
Pathway
vja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111264684
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111264684
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
111264684
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
111264684
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
111264684
NCBI-ProteinID:
XP_022696497
LinkDB
All DBs
Position
Unknown
AA seq
298 aa
AA seq
DB search
MATTLLSDSERIFIIHGVEDNLRCDGRSCLEYRHIEMELGAAPNCSGSSHVRIANTDVLV
GIKVNYSRSRVSIEIGAPEPSAPDSGRIEFFVDFTANADPEFEGSGGDDLGQQIAGALSE
AYVSKRFLDLSSLCIVSGQQVWTLYVDVLILELGGSLYDAVSVAVKAALRDLRIPRLSVS
IGEDGRPEIEVSDDPHAVDPLEMGLVPCFVTLSKIGSQFVVDVSQEEAECTTVHLCCAVA
PNGRIATTMKNGVGSLHTHNLIEALQLAQEIGVALHKALDKRLVKAQELSGRTNGFLL
NT seq
897 nt
NT seq
+upstream
nt +downstream
nt
atggccactacgttactaagtgattcggaacgaattttcattattcacggagtagaagac
aaccttcggtgtgatgggagaagctgtctggagtatcgacatattgaaatggagttaggt
gctgcgccgaattgcagcggttcgtctcatgttcgtatagccaacaccgacgttctcgtg
ggcatcaaggtaaactattcaaggtcacgtgtgagtatagagattggtgctccagaacct
tcagcgcctgacagtggccgaatcgagttttttgttgatttcaccgcaaacgctgatccc
gaattcgaaggaagcggaggtgatgatcttggacaacagatagcaggcgctctcagtgaa
gcctatgtctcgaaaagattcctggatctgagttctttgtgcattgtttctggccagcaa
gtatggacactttacgtcgatgtgctcattttagaattgggtggcagtctatacgacgcg
gtatccgtagctgtcaaggcagctctaagagatcttcgcattccacgattaagcgtcagc
ataggcgaggatggacggccagagatcgaagtttctgacgatccacatgctgttgatcct
ttagaaatgggcttggttccttgtttcgtcaccctttccaaaattggttcacaatttgta
gttgacgtcagtcaggaggaagccgaatgcaccacggtccatctctgctgtgcggtggcc
ccgaatggccgtattgctacaactatgaagaatggcgtcggaagccttcatacgcataac
ctgattgaagcacttcaactggctcaagagatcggagttgccttgcacaaagcgttggac
aagcgactcgtaaaagcgcaagaacttagtggacgaactaacggttttcttttgtag
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integrated database retrieval system
