Varroa jacobsoni: 111265415
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Entry
111265415 CDS
T07417
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
vja
Varroa jacobsoni
Pathway
vja03013
Nucleocytoplasmic transport
vja03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111265415
03015 mRNA surveillance pathway
111265415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111265415
Enzymes [BR:
vja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111265415
5.6.2.5 RNA 5'-3' helicase
111265415
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111265415
mRNA cycle factors
Common to processing body (P body) and stress granule
111265415
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
UvrD-helicase
SLFN-g3_helicase
NPHP3_N
AAA_16
NAT10_TcmA_helicase
nSTAND3
SRP54
DEAD
AAA_25
AAA
CC_Bre1
Motif
Other DBs
NCBI-GeneID:
111265415
NCBI-ProteinID:
XP_022697813
LinkDB
All DBs
Position
Unknown
AA seq
1346 aa
AA seq
DB search
MEGTGATNGGGYGLGGVGGPGSSQALSFLDVVAGEIAGDTQGSEFDFTDFTMPSQQSTQP
HTAASGSHHHLHHSHHTISGAGLLDSQQQSGVSSLGNVDHLDVQKNEQLTDLSSKSQQLD
DTNDIDIDTRCNDVEELSRQVGALELNFEDDPDDADGLGGLGGDGGLSGSGSTGMPASEL
PAHACKYCGIHDPACVLQCNICKRWFCNGRGSTSGSHMVNHLVRAKHREVTLHRDGPLGD
TALECYACGCRNVFVLGFIPAKADSVVVLLCRHPCASQSSLKDMNWDPEQWKPLIHDRSF
LAWLVKAPADAEQRRARQISTQQMAKLEELWKDNVDASFQDLERPGVDEEPQQVLLRYED
GYQYQNILGPLVKMEADYDRKLKEAQTQEDVHVRWDMGLNKKPLAYFGIARSDTDMRLMH
GDELRLRYVGDMHKPWSGVGHVIKIPDSHSEEVGIELKAAPAHASPPPTDCTVNFVVDFV
WKATSFERMQAALRRFAVDEASVSGYIYHRLLGHEVEDIVLRCQLPKHFSAPNLPELNRS
QVFAVRHALQRPLSLIQGPPGTGKTVTSASIVFHLAKQGHGPVLVCAPSNIAVDQLTEKI
HRTRLKVVRLCAKSREAINSPVSFLALHNQVRNMEANASQHVSELKKLQQLKDETGELSS
ADEKRYRTLKRLCERELLEAADVICCTCVGAGDPRLLRLKFHSILIDECMQATEPECMVP
VVLGAKQLILVGDHCQLGPVVMCKRAARAGLAQSLFERLVLLGIRPLRLEVQYRMHPALS
EFPSNLFYEGSLQNGVFAEERRLKGVDFPFPQADKPMFFWCCNGQEEIAASGTSYLNRTE
AALVEKMATRFLRSSVKPEQIGVITPYEGQRAFLVQHMQYSGSLHAKLYQDIEVASVDAF
QGREKDLIIMSCVRSNEHQGIGFLNDPRRLNVALTRARFGLIIVGNPKVLAKQPLWNHLL
AFYKDNSVLVEGPLTNLRESLLQLQRPRRLDRPGDLGLSGISGLSCPFMNTAMFARSADQ
HVAGHAMNSISGARGDSSTSNGPLNSGGLSMPSGVGPGHHQQHHGLSTMSGAHHGMLDAR
LGSGTGSTYSAQQAQWRADNVLPFGRDPMSYIAADRPQPAAFNMHGPAAALPMGVFMTPL
GQQHHPGTGPGGLGTPARYFSLQQQLQQQQFMTTQASRQNSKTTGKTRANAGTGRRPARN
AQAAANNPLISQQDGLNDAGQQLTQAVSGAFGPGDSGLFSQQQHLPQTNTQSNVNNNSLL
LGASAGKGTQLTQTDGLTQPGHHNALDTSGLLSQDPYGPGGTGGLDLDVDFKSQADGGCG
LLSQGDTWPCGVAGEGGTQSQFSQPY
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaactggagccactaatgggggtggatacggtttaggtggagtcggaggtcct
ggctcgagtcaggcattaagtttcctcgatgttgtcgcaggggaaattgccggagacacg
cagggttcagaattcgatttcaccgattttacgatgccttctcagcagtcgacacagcct
cacacagctgcgtcaggatcccaccaccacctccatcattcgcaccacactattagtggg
gcaggtcttcttgattctcagcagcaaagcggagttagcagcctgggaaatgttgaccac
ctcgatgttcaaaagaacgaacagctcacggatctaagcagcaagtcacagcagttggac
gataccaatgacattgacatcgatactcgatgcaacgacgttgaggagctctcccgacag
gtgggagcacttgaactaaactttgaagatgacccagatgatgcggacgggttagggggc
cttggaggcgatggcggcctatcaggcagcggtagcacaggaatgccggcatcagaactt
ccggcacacgcatgcaaatactgtggcatacatgatcctgcttgcgttcttcaatgtaat
atttgcaaacgatggttttgtaatgggcgaggctcaacatcaggaagccatatggtaaac
caccttgtacgtgctaagcatcgcgaggtaacgctccaccgtgacggtccactaggcgat
actgcactcgaatgttatgcttgtggctgccgaaatgttttcgtactcggctttattccg
gcaaaggcggactcggttgtggttcttctctgcagacatccttgtgcttcgcagagctct
ctcaaggacatgaactgggatccagagcagtggaaacctctgatccatgaccgatcgttt
cttgcttggttggtcaaagcacccgcagacgcagagcagcgccgggcccgtcagatctca
acacagcaaatggccaaactcgaagagctctggaaggacaacgtggatgcatccttccaa
gaccttgagcggcctggcgtcgacgaagagcctcaacaagtgctacttagatatgaggat
ggttaccagtaccaaaatatcttggggccattggtaaaaatggaagcggactacgatcgt
aaactaaaggaagctcaaacacaagaagatgttcacgtccggtgggatatgggactcaat
aagaagccattggcttatttcggcattgcgcgatctgacactgacatgagattaatgcac
ggagatgaacttcggctcagatatgtcggcgacatgcacaagccgtggtcaggtgtaggt
catgtaatcaagattcccgattcacactcggaagaagttggtattgagttgaaggcggct
ccagcccatgcaagtcctccgcctaccgattgtacagtaaactttgttgttgacttcgtg
tggaaagcgacttcattcgagaggatgcaagccgcgctacgaaggttcgctgtggatgaa
gcatctgtatctgggtatatttatcatcgtctacttggccacgaagtcgaggacatcgtg
ttgcggtgtcaacttcctaaacatttctcggcacctaatctaccagaattgaatcgttca
caagtgtttgcagtgcggcatgctctccagcggccgttgtcactgattcaggggccacca
ggtactggtaaaacggtgacttcagcgtcaatcgtgtttcatcttgcaaaacaggggcac
ggacctgtactcgtctgcgcaccgtccaacatagcagttgatcagctgaccgagaagatc
caccgaacaagactaaaggtagtgcgtctgtgcgccaagagccgagaagctattaactcg
ccggtaagcttcttggccctacataaccaggtacgtaatatggaagcgaacgctagccag
cacgtttccgaattaaaaaaattgcagcaacttaaagatgagacaggcgaattgtcctca
gccgatgaaaagcgttatcggacactgaaacgcctttgtgaacgtgagctgctcgaagca
gctgacgtcatctgctgtacgtgtgtgggagcaggcgatcctcgacttctgcgattgaag
ttccactccattctcatcgatgaatgcatgcaagccaccgaacctgaatgcatggttccg
gtggttctgggagcgaaacagttgatcttagttggcgaccattgtcaactgggccccgtt
gtcatgtgcaaaagggcagcccgcgcggggcttgcgcagtcgctgttcgagcgtctcgta
ctgcttggaatccgtcctcttcgactcgaggttcaataccgtatgcatcccgcactctcg
gaatttccgtcaaatttgttttacgaaggatctctccaaaatggcgtatttgccgaggaa
cgccggctcaaaggcgttgacttcccctttccgcaggccgataaaccgatgttcttctgg
tgctgtaacggccaagaagagatcgctgccagtggaacctcctacctaaaccggacggaa
gcggccctcgtagaaaaaatggccacgcgtttccttagaagttcagtgaagcctgagcaa
attggcgttattacgccgtacgaagggcaacgtgcctttcttgttcagcacatgcaatat
tctggatcgcttcatgctaaactctatcaagacatcgaagtggcgtccgttgatgctttc
caaggtcgcgagaaggatctgattatcatgtcgtgtgtccgatcgaacgaacatcaagga
atcggttttcttaacgatcctcggcgacttaatgtcgccttaaccagagctcgttttggt
ttaatcattgttggcaatccgaaggtgctggcgaaacagccgctctggaatcacttgttg
gcattttacaaagataattccgttcttgttgaaggcccacttacaaatctgcgagagagc
cttttacagcttcagagaccgagacgccttgaccgccctggagatctgggtctcagtggc
atcagtggattaagttgcccctttatgaatacggcgatgtttgcccgctcagcggaccaa
catgtggcaggacatgctatgaattcgataagcggcgctcgaggagatagtagtactagc
aatgggccgttgaacagcggaggactgagcatgccgagtggcgtaggcccaggtcatcat
cagcagcaccacggtcttagtacaatgagcggtgcacatcacggaatgttggacgcccgt
ttaggttcaggcactggttcgacttactcggcacagcaggctcagtggcgagccgataac
gtcctccctttcggtcgtgatccaatgagctacatcgcagctgatcggcctcagcctgca
gcatttaatatgcatggaccagctgcggctttaccaatgggcgtcttcatgacaccgcta
ggtcagcagcaccatcctggtacaggaccaggcggtcttggaactcccgccagatacttc
tcgttgcagcagcaactccagcagcaacagttcatgactacccaggccagtcgtcaaaat
tctaagaccaccggtaaaacacgagcgaacgctgggacaggccgccggcctgcccgcaac
gctcaagccgcggctaacaatccgttgatttcgcaacaggatggattgaacgatgcaggc
caacagttaacgcaggccgtttctggggcctttggtccgggagacagtggcctgttctca
caacaacagcatcttccgcaaacgaacactcagagcaatgtcaataataacagtctgttg
ttgggtgcgagcgctgggaagggcactcagctgactcagaccgatggccttacgcagccc
gggcaccacaatgcattggatacatctggtttactttcgcaggatccgtatggtcccgga
ggaacgggagggcttgatcttgatgttgacttcaaatcgcaagccgatggcggatgcggt
ctgttatcgcagggcgacacctggccgtgcggggttgcaggtgaaggtggtacccaatcg
cagttctcccagccgtactga
DBGET
integrated database retrieval system
