Varroa jacobsoni: 111265491
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Entry
111265491 CDS
T07417
Name
(RefSeq) DNA mismatch repair protein Msh2-like isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
vja
Varroa jacobsoni
Pathway
vja03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
111265491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vja03400
]
111265491
DNA repair and recombination proteins [BR:
vja03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
111265491
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
AAA_27
AAA_29
SidC_lipid-bd
Motif
Other DBs
NCBI-GeneID:
111265491
NCBI-ProteinID:
XP_022697958
LinkDB
All DBs
Position
Unknown
AA seq
903 aa
AA seq
DB search
MVDVPQHATLQDVARDTNFIKFYGNLPSKPATTIRLFQRKNYYTVHDDDASLASAQLLKV
SIVQIQGIPSAWISQKNYEKFLRFLLLAKAYRVEVYSLDAASGSWQVSLNASPGNLVEVE
DVLFSCDSNEDVNTHCSGIAALHVTNRGQQVVVGLAYCEPILQSLRVAQLIDDMTLTKLQ
VLLVQISPKEMLIPTKTESFPRVTQLLKRNNIAYHELGHEHFNDKNLEQDIEKIYKFARK
QAKNIRILPELKVEPARRPLAALLNYLNLASTPTSFGQFTIHELRPDQIMRIDSAAVEAL
NLLPVGDMAKQDTIYGLLCEARTPGGQRTLAEWMKQPLLDKAKIEERLDMVECFVRDNSI
RSTLHGDLLRRFPDLSYMAKRLHMKKIRLADLYKLYTIVRSVPRVVEALGETNCGSLEDA
VVKRLKVSVEDFEKFIEMIEQVIDVERAEAKREYLVQPSFDEALQELHEQIVGCEERLQE
LWDTVACEMRVEKGRVLKLDQGLDGGFVFRVTNKEEKRIRDNQSFDIIDVKKQGISFVNR
QLRELNGDYIRLKNDYRVMQQTLVGDIIDVSAGYAEPLYHLAEVINQLDAVVGLSVAAVN
GNFVRPNILESEGKELILKGVRHPLVERKRGSFVANDVHFERQNKHFHVLTGPNMGGKST
YMRSIAVCVVMAQMGSFVPCNEATIAIRDAVLTRVGAGDAIVRGVSTFLAEMLEIAFILR
TVTNASLVLIDELGRGTSTYDGLGIAWAIASNLAQSGCMSIFATHFHELTALESRVQGVV
NAHVSVHVEDQALTLLYKVAPGPCHQSFGIEVAELAELPDDIISMAKAKLAQFSSMDHIV
ELAKQDQLTKDCEELMKEFCKECDAIMEDKSLDYDQKLKRIIEQKEELKKHANPILKTII
GSY
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggttgacgtaccccaacacgcgacattgcaagatgtggcacgtgacacgaacttcatc
aaattttatggaaatcttccctcgaaaccggcgacaacgattcggttgtttcaacgcaag
aactattacaccgtgcacgacgatgatgcatcgttggcttctgcccaactgctgaaagta
tctattgtgcaaatacaagggattccatcggcttggatcagccaaaaaaattacgagaaa
ttccttcgattcctgttactggctaaagcctatcgagttgaagtctattcgctggatgct
gctagcggctcatggcaagtttcgttaaacgcctcccccgggaatctcgtggaagttgaa
gatgtgctattttcgtgtgattcaaatgaagatgtcaatacacattgcagcggcattgct
gctcttcacgtcacaaatagaggacaacaagtcgtggtcggactggcctattgcgagccc
attcttcagagccttcgcgtggcacagctgatcgatgacatgactctgacaaaacttcag
gtgttactcgtccagattagtccgaaagagatgttaataccgaccaaaactgagtcattt
cctagggtgacccagttgcttaagcgcaataacatagcttatcatgagctgggtcacgag
cacttcaatgacaaaaatctggaacaagatatcgaaaaaatctacaagttcgcaaggaag
caagctaaaaacatcagaatcttgccggagctgaaggtggaacctgcaagacggccttta
gcagctcttttgaattatctgaatttggcgtcgacacctacctcattcggccaattcact
atacatgaactacgacctgatcagatcatgcgtatcgattcagcagctgtagaagccctc
aatctgcttccggttggtgacatggcaaagcaggacacgatatatggccttctctgtgag
gctcgtactccgggcggtcagagaacgcttgccgaatggatgaaacagccactgctcgat
aaggccaaaattgaggaaaggctcgatatggtcgaatgcttcgtccgggataatagcatt
cgatctaccttgcatggcgacctgcttcgaaggttccctgatctcagttatatggcaaaa
cggctccacatgaaaaaaattcgtctcgcggatctctataagctctacacaatcgttcgc
tcagtaccacgcgtagtcgaagcactcggggagacaaactgcggcagtcttgaggatgcc
gtcgtcaagaggctgaaggtgtctgttgaagatttcgaaaaatttatcgaaatgatagaa
caggtcattgatgtggaaagggccgaggctaaacgcgaatacctggttcaaccctcattc
gacgaagctctacaggagctccacgagcaaatcgttggctgtgaggagaggttacaggag
ctgtgggatacagtcgcttgcgaaatgcgcgttgagaaaggacgcgtcctcaagctggat
cagggtctggatggcggcttcgtgttccgcgtaaccaataaggaggaaaagagaatccga
gataatcaatcgtttgatattatcgacgtaaaaaagcagggaatctcgtttgtgaatcgt
cagctacgggagctgaatggggattacattcggttaaagaatgactatcgtgtcatgcag
caaactcttgttggagacataattgatgtatcagctggttacgctgagccgttgtaccat
ttggcagaagtcattaatcagctcgacgccgttgttggtctttctgtggccgccgtcaat
ggaaattttgtccgccccaatatcctagagtcggaaggcaaggaactgatccttaaagga
gtccgtcatccactagttgagcgaaaacgaggcagttttgtggccaatgacgtgcacttc
gaacgtcagaataagcactttcacgttttgactggaccaaatatgggtggaaaatcgacc
tatatgcgatcgattgccgtctgcgttgtaatggctcaaatgggttccttcgtgccgtgt
aatgaggcgacaatagccattcgagatgcagtgctaacacgagttggcgccggggatgct
atcgtccgcggtgtttctacgtttttggcggaaatgctcgaaatagcattcattcttcgt
acagtcactaacgcgtcactagtacttattgacgagctcggccgaggaacgtctacatat
gatggacttgggatcgcgtgggctattgcttcaaatctagcccagagcggttgcatgtca
atttttgccacacatttccatgagctcacggctttagagtccagagttcagggcgtggtg
aatgcccacgtgagtgtccatgttgaagaccaggcacttacccttctatacaaggtggct
cctggaccgtgccatcagagctttggcattgaggttgctgaactggctgaacttccggat
gacataatttcaatggcaaaggcgaaactggctcaatttagttcgatggaccacattgtc
gaattggctaaacaggatcaattaactaaggactgtgaagagctgatgaaggaattctgc
aaagaatgtgacgccattatggaagacaaatcattggactacgaccagaaacttaagcgg
atcattgagcaaaaagaagagctgaaaaagcatgccaatcctatcttaaaaaccattatt
ggatcatattaa
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