Varroa jacobsoni: 111266289
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Entry
111266289 CDS
T07417
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
vja
Varroa jacobsoni
Pathway
vja03040
Spliceosome
vja04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111266289
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111266289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vja03041
]
111266289
04121 Ubiquitin system [BR:
vja04121
]
111266289
03400 DNA repair and recombination proteins [BR:
vja03400
]
111266289
Enzymes [BR:
vja01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111266289
Spliceosome [BR:
vja03041
]
Complex B
Other components
Prp19 complex
111266289
Complex C
Prp19-CDC5 complex
111266289
Ubiquitin system [BR:
vja04121
]
Ubiquitin ligases (E3)
U-box type E3
111266289
DNA repair and recombination proteins [BR:
vja03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
111266289
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
Prp19
WD40_CDC20-Fz
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
PEP5_VPS11_N
Beta-prop_Vps41
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_DCAF4
U-box
PROPPIN
WD40_like
Cytochrom_D1
Beta-prop_SPT8
B-prop_COPA_B_2nd
Beta-prop_WDR35_TULP_N
ATG16
PQQ_2
Motif
Other DBs
NCBI-GeneID:
111266289
NCBI-ProteinID:
XP_022699392
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MALVCALSNEAPECPVVSPVSGSVFEKRLILKYISENGCDPITQQEMSAEQLIELKTPPL
VKPRPPTLTSIPAILKALQDEWDAVMLNSFSLRQQLHTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAAAQPQHIQEAQENSKISETSIAVPSAAGAGKDEVVGMGPEVI
QKLQDRATVLTAERKKRGRNVPEELTKLETVKAFRTKDTQTSLHLSSTPGILALDINPRD
SSRLVTGGNDKHAVVYNKDSQQIVTVLKGHQKKVTHTIFHPDGEHVITASPDTAVRVWHL
GTSQTIQLIRPHEGPISGLSLHATGDYVLTTATDDHWAFSDIRTGKVLAKTADNQAVDAH
SLTAAQFHPDGLIFGTGTSDSLIKIWDLKERQNVANFPGHWGPVTAIAFSENGYYLATSA
EDATVKIWDLRKLKNIKTLQLDDGYAVNDLTFDQSGQYLAVAGQDVRVYLSKQWELINVF
QEHTAAATGVRFGVHASFIASVSQDRSLKLYTTP
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggtatgcgctctgagtaacgaggcaccggagtgccccgttgtatcgccggtg
tctggttcagtctttgaaaaacggcttatccttaagtacatctctgaaaatggatgtgat
ccaatcactcagcaagagatgagcgctgagcagctgatcgaattgaagacacctccgctc
gttaaaccaagaccaccaaccctcactagtattcctgccatactgaaagctctgcaggat
gaatgggacgcagtaatgttgaatagcttctcgttgcgacagcaattgcacacagctcga
caggagttgtcgcacgccttgtatcagcatgacgcagcctgtcgcgtaattgctcgtctc
acaaaggaggtcacggccgctcgagaggctttggccaccctcaaaccacaggctgctgct
cagccacagcatatacaggaggcacaggagaacagcaaaatttcagaaacgtccattgca
gtaccttcagctgctggcgcaggaaaggatgaggtggtaggaatggggccagaagttatc
cagaaattacaagaccgtgcgacagtgctcactgcagagcgtaaaaagcgtggccgtaac
gtgcctgaagagttgacaaaactggaaactgtcaaagcattcagaacaaaggatactcag
acgtcgctccatttatcatcgacgcctgggattctcgcgcttgacattaatcctagggac
agttcgcgtctggttactggaggtaatgataaacatgccgttgtttacaacaaggattcg
cagcagatagtcacagtactcaaggggcatcaaaagaaggtaacgcacacgattttccat
cctgatggcgaacatgtgatcacggctagtccagatacagccgttcgtgtatggcatctc
ggcacttcgcagactatccaactaatccggcctcacgagggacccatatcagggttgtcg
cttcatgccacaggggattatgtgctcaccactgctacggatgatcactgggccttcagt
gatatacgcactggaaaggtgctggccaagaccgcggataaccaagccgttgatgcccac
tcactcacagctgcgcaattccatcctgacggcttgatatttggaacgggaacatcagac
tcacttataaagatctgggacctaaaggaacgtcaaaacgtggcgaacttccccggacat
tggggtccagtcacagctatcgccttttcggaaaatggatactatttagccacgtcagca
gaagatgccacagtgaaaatctgggatcttcgaaaactgaaaaacattaaaacgctccaa
ctagatgatggttacgccgtgaacgacctcacgttcgatcagagcggacagtatctggct
gttgcgggacaagatgtccgcgtatatttgagcaagcagtgggagctgatcaatgtcttc
caggagcatacagctgccgcaactggtgtacgtttcggcgtgcatgcctcatttattgca
tctgtcagtcaggaccgctctctcaaattgtacactacaccttaa
DBGET
integrated database retrieval system
