Varroa jacobsoni: 111267948
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Entry
111267948 CDS
T07417
Name
(RefSeq) uncharacterized protein LOC111267948
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
vja
Varroa jacobsoni
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vja03021
]
111267948
Enzymes [BR:
vja01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
111267948
5.6.2.5 RNA 5'-3' helicase
111267948
Transcription machinery [BR:
vja03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
111267948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
UvrD-helicase
AAA_19
AAA_12
FHA
AAA_16
Viral_helicase1
DEAD
ResIII
AAA_22
AAA_30
NACHT
Motif
Other DBs
NCBI-GeneID:
111267948
NCBI-ProteinID:
XP_022702304
LinkDB
All DBs
Position
Unknown
AA seq
1545 aa
AA seq
DB search
MMGRNSASTSDGHRSIPTGVCVSGRDVATLLYSKVVDHLSHTLSSRGGMRTYARNGTIFM
HCSLVEADFLMANRPHVIPECPKELNVRRVSPQCASDRSTFQPDRRVNIRRILPQIYGLT
QMLRITLHDPPELPQAGICASLAAALDQVGRVKEVVSVASDSNTYIVTFHDYDSVDVFIL
LCISQRDNGVPLPISALPDAPPRSSSKLVYDCRPSTTALSHLLRVGPPNLSAAGLTLVSA
SDDKETKPLSDRATSAGGFSIQTERSISISRANHREETISHTTTNDRVSTRSPMAASSSA
NHDSTSITTSARAHCPRGLRNNESEVKLTKELKRKVYSPPSCKRIKTDIKPPSPIRQPFM
QDVAQQVPASRGSQRQQHWELHKYVGGQRSKESIDLCSLGFPIAIGRDPVRAKIQVGGPS
MQHVSRLHVELHENKAFGESANSLRLDCHSANGTVVDGIYVKKGDWAEIREGSSFILGDV
SYLKGSDAPNQELRFTLHRASDQDASKENCSSSVHRNTTMQCMFIESKRNFELQKDHAIT
ISDSEEEKDVKSDIQPSLMLRNPAANHSRSDDMFNEIIVLSDDDDNPDEISENNQFQQLV
MKFKDEPIDDEELPFSPSANKATANTNVIVCTERPLTAKVSHGLISNQVSNAQSSENRPS
GGTGSPAVASPTVQETIVPILSVPNPTVTHFSHPSLGKPACDLFKLNVTTSERLQPICSG
TPSPSDSSTRPIERESNQLRSRRASSPSIGHPRSLPQIRIGFDAFRRCLLDLRLGIGDLP
QPCLVKFTNYVKYSGIPKNITELTRLLFSCFCLEASARVEIALCRRDRRRSQSQPQMKDE
LSVISSLISQKQVADGVLRVRLIAACDNGAGRPLESVSVVLLHVVCVRRGGKQLRSRSLL
GLVYSSERKDRRDRSGTVAVPDVLAKSEQKLDVVDDVLIDLNAHELDGLQLQIDQLLQIE
RLCEVNELKKVVSMRQMPSSHSMFLLGPPYSSSACPIWSPQDASAAQTSQSDTMQRVMTR
IARTPKLSSEESIVVCAALAQILDHPTEDCEGILTPTTMLVHGAAGSGKTATLLEVALQA
VLAKPQETVLVFCKWPQAADQVALKLHGLIESRGYGDRIRVTRTGRSRHPAVASITLSER
AKQAHAIEHEGSLNKLKFSIGETKKVIQGLRHSLEDQLTELPLAVKRKKLQEIAQFEEVL
LSEQEQLAREEKRLYQDELIRESFAGRRRRILESSNILVCGYIDVETSIIGYAFERTHGK
RISLILVDQAQEISIGDLVPVMQLPVNRLVFFGDRNQSRFWRPKHTIVRNTDLFRQSAFE
RMIAACPQKAFYLKTQWRLPSPLDGIVNVMFYGGRLRSMRDKTAVAPNRDRLDCAIKLAA
LTMINVSTAELLPSRDLPRAPIQMICNVVEALAPHSSRIHIVLSFASNHIPVSLLPPNLA
SRCEAQFIGPDLLTHVADPNVVVLPLFNLPFVDELSRRDPPLLCSIVTRPNTSLIIVGHL
TAAGKTAERIEELVQRAKRANRYINEKPAWLTKITPRNLSQYLME
NT seq
4638 nt
NT seq
+upstream
nt +downstream
nt
atgatgggacgaaattcggcctcgacatcagatggtcaccgcagtatcccaactggggta
tgcgtttccggcagggacgttgcgacattgttgtactcgaaagttgtggaccacttgtca
catacattatcaagccgaggtgggatgagaacttatgcgcgaaacgggacaatctttatg
cattgctcgttagttgaagccgattttcttatggcaaaccggccacacgttataccggaa
tgtcctaaggagcttaatgtacggcgggtatctcctcagtgcgcctcggatcgatctaca
tttcaacctgatcgacgagtcaatatccggcgaatactccctcaaatctatggtttgact
caaatgctaaggattacactgcatgatccgccggaactaccacaagcggggatctgtgca
agcctggcagctgcccttgatcaagttggcagggtaaaagaggtggtatcggttgcctcg
gatagtaacacatacattgtgacgtttcacgattacgactcggtagacgtgtttatccta
ttatgcatttcgcagcgtgataatggcgttcctctaccgatcagcgccttaccggatgca
cctccgcgttcatcatcgaaactggtatacgattgccggccttcgacaacggcattgtcg
catcttcttcgcgttggtccaccaaacctctcagcagcagggctcacgttggtatcggct
agtgacgacaaagagacgaaaccattgtcggacagagctacgtctgcaggtggtttcagc
attcagaccgagcgttcgatatcgatttcgcgtgcaaaccatagagaagagactatatca
catacaacaacaaacgaccgggtttcgacacgctcgcctatggctgcgtcctcttcagcc
aatcatgatagcacgagtattacaacatccgctcgggcacactgtcccagaggtttacgg
aacaacgaatcggaggtcaaactgacgaaagaactaaaaagaaaagtttattcgcctcca
tcttgtaagcgaatcaagactgatattaaaccgccctctccaatccggcagccgtttatg
caggatgtagctcagcaagtaccagcttcacgtggaagtcaacgacaacaacattgggaa
cttcacaaatacgtcggaggacagcgatctaaagagagtattgatctttgctcactcgga
tttcctattgcgattggtcgcgatcctgtacgggcgaaaattcaggttggaggacctagt
atgcagcatgtgagtcgtctccatgtcgaactacatgaaaataaggctttcggtgagtct
gctaattcattgcggctcgattgccactcagctaatggtactgtagttgatggaatttac
gtgaagaaaggtgactgggctgagatacgtgagggttcttcatttatcctcggtgacgtc
tcttacctgaaaggttctgatgctccaaatcaagaacttcggtttaccctacatcgagcg
tctgaccaagacgcgagcaaggaaaactgtagcagctccgtacatcggaatacaactatg
caatgtatgtttatcgaaagtaaaaggaatttcgaactacaaaaagaccacgccatcaca
atatctgactcagaagaggagaaagatgtaaaatccgatattcagccgtctctaatgctt
cggaaccctgcggctaatcacagtagatcagacgatatgtttaatgaaataatagtttta
tcggatgacgacgacaacccagacgagatctcggaaaataatcaatttcagcaattggta
atgaaattcaaggacgaaccgatcgacgacgaggagttgccttttagtccttcagctaat
aaagccacagccaatacaaatgtcattgtctgtaccgaaagaccgcttacagctaaagta
tcccatggtcttatatcaaatcaggtgagcaacgcgcagagcagcgaaaatcgtccaagt
ggaggaacaggtagcccagccgttgcgtcacctacagttcaagaaactattgtccctatt
ctaagtgttcctaatcctactgttacgcacttcagccatcctagtttaggaaaacctgct
tgtgatctattcaaattgaatgtgacgacatcggaacgactacagcccatttgcagtgga
acaccgtcccccagcgattcctctacgaggcccatagagcgcgagagtaaccaactacgc
tcgcgtcgagcgtcgagtccttcaattgggcacccacggtcattacctcagattcgtata
ggctttgacgcctttcgtcgatgtctgcttgatttgcggctcggtatcggcgatttacca
cagccgtgtctggtaaaatttactaattacgtaaaatatagcggaattcctaaaaatatc
accgaattgacgcgacttctcttttcctgtttctgcctcgaggcttctgcaagggtagag
atcgcgctatgccgaagggaccgtcgaaggagtcagtcgcaaccacagatgaaagatgaa
ttgtcagtaatatcgtcacttatctcacaaaagcaggtggccgacggggttctcagagta
agattgattgctgcttgtgacaacggcgctggacggccgttagagagtgtatcagtggta
ttgctgcacgtggtgtgtgtacggcgcggtgggaagcagttacgatcacgtagtttgctc
ggcctcgtatacagcagcgaacgtaaagaccgacgggacaggagtgggaccgttgctgtg
cctgatgtgttagcaaaaagtgaacaaaaattggatgttgtcgatgacgtcctaattgat
ttgaacgcccacgaacttgacggacttcaattacagattgatcaactgttacaaatagaa
cgtttgtgcgaggtgaatgagcttaagaaagtcgtctcaatgcgacagatgccatcgtcg
cacagtatgtttctactcggtcctccgtattcctcatccgcatgtccgatttggagtccc
caagatgcttcagcggcccagacgtcacagtcagacacgatgcagcgcgttatgacccga
atcgcacgtactccaaagctaagttcagaagagagcattgtagtatgtgctgctctggct
caaatacttgatcatccgacggaagactgcgaaggcatacttacgcctactacaatgctg
gttcacggtgcggcgggaagtggcaagacagcgaccttactcgaagtagcactccaggct
gtgttagcaaaaccgcaagaaactgtgctggtcttctgcaagtggcctcaagccgctgac
caggtggcgcttaagttacacggcctaatagaatctcgcggttatggagatcgcattcgc
gtgacacgcactggccgatcccgtcatccagctgttgcatcaatcacactcagcgagcgc
gcgaagcaagcacatgccatagagcatgaaggctccttgaataagctaaagttctctatt
ggggaaacgaaaaaagtcattcaaggacttcggcatagtcttgaagatcagttaaccgag
ctgcctttagccgttaaaagaaagaaattgcaagaaatcgcgcagtttgaggaggttttg
cttagcgaacaggagcaacttgcccgggaagaaaagcgactctatcaggatgaattgata
cgtgagtcatttgcaggtcggcgtcgtcgtattctcgagtcttccaatattctagtgtgc
ggctacattgacgtagaaacatcgattatcggatacgcgttcgaacgcactcacggcaaa
cggatttctcttatattggtggatcaagcgcaagagatctctataggcgacctcgttcct
gtaatgcagttacctgttaaccgcttagtgtttttcggagatcgaaatcaaagtaggttt
tggaggccgaagcatacgattgtccgaaacacggatcttttcagacaatctgcttttgaa
aggatgatcgctgcgtgtcctcaaaaagccttctatttaaaaactcagtggcgcctaccg
agcccgctagacgggatcgtcaacgttatgttttatggaggtcggctacggtcaatgcgt
gacaaaactgctgtggcgccgaatcgggatcggttggactgcgcaattaagttagccgct
cttactatgatcaacgtaagcactgccgaacttctaccttctagggatcttcctcgcgcc
ccgattcagatgatttgcaacgttgtcgaagcgctagctccccattctagccgaattcat
atcgtgttatcgttcgccagtaaccatattccggtatccctccttccaccaaacttagcc
tcacgctgtgaggcccagtttattgggcccgaccttttgacgcatgtcgctgacccgaat
gtcgtggtgcttcctttatttaacctgccttttgtcgacgaactctctcgccgcgatccg
cctttgctgtgttccatcgtgactcgtcctaacacatcccttataatcgttggacacctg
acagctgcaggtaaaacagccgagagaatcgaggaattggtccaacgagcaaaaagagcc
aatcgttacatcaacgaaaagcctgcttggctaacaaaaattacgccccgtaatttgtca
caatacctaatggagtaa
DBGET
integrated database retrieval system
