Varroa jacobsoni: 111268172
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Entry
111268172 CDS
T07417
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
vja
Varroa jacobsoni
Pathway
vja03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vja00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111268172
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vja03019
]
111268172
Enzymes [BR:
vja01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
111268172
Messenger RNA biogenesis [BR:
vja03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111268172
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111268172
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_14
LRR_8
LRR_4
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
111268172
NCBI-ProteinID:
XP_022702693
LinkDB
All DBs
Position
Unknown
AA seq
623 aa
AA seq
DB search
MFNPRDTLRSLPHPLVPLMPLHPRRSPHLASMSPLMKLHALHLHYNQWHANMVRMGVRPE
RMVVHDDQRMSRLYGVSGMGGRNLARDKDGPGNNKLDNQAGGNKFDSGGVSLPRRNHTFM
QADDLQSGKKSKWTELEIKGFVRNISPSLWQFTHLTALYLNDNGLQRLPVDICRLVHLAV
LDVSTNKLRSLPNELGDLVQLRELLLNNNLLHSLPYELGRLFQLITLGLKGNPLSPDILS
LYSEPNGTQKLLTYLLDSLPASQSGAPTRHWLRKTVDPPQGKSVFTQLTVMCYNVLCDKY
ATRTMYGYCPSWALTWEYRRKGIMEEIRSNSADIITLQEVETEQFYNYFEPELKHEGWEG
IFSPKSRAKSMPETDRKHVDGCAIFYKTSKFSVLDKHLIEFNQLAMANAEGSDDMLNRVM
TKDNISLAVLLQLKEHPDVPVLVCTAHIHWDPEYCDVKLIQTMMLMNELQTIHEKSKALA
KTTDIPIILTGDLNSLPDSGVIEYLRNGRIACDHPDFKELNSYRSCLKKMTVDSNSQLGA
NSYTHPFQLEQGYTENDMPYTNYTYDFQGMIDYIFFTKKQITVAGILGPLDPEWLAENKV
IGCPHQEIPSDHIPLVAQLQLFK
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatccgagagatacgctgcgatccctgccgcatccactagtgccactcatgcca
ttacatccgcgccggagtcctcatttggcctcgatgtcaccactcatgaaattgcacgcc
ttacacctgcattataaccaatggcacgccaacatggtccgaatgggtgtgcggcctgaa
agaatggtggtgcatgacgatcaacgtatgtctcgcctctatggggtgtcgggcatgggc
ggacggaatctggcgcgagataaggatgggcctggtaacaacaagctggacaatcaggcg
ggtggtaacaaattcgactcgggaggcgtctcgcttccgcgacgaaaccacacgtttatg
caggcggacgatttacaatcaggcaaaaaaagcaaatggaccgaactggaaattaagggc
tttgttcgaaatatctcaccatccctctggcaattcacccatcttacagcactttatctc
aacgataatggacttcagagactgcctgtagacatttgtcgtctggtccacctcgccgtt
ctcgatgtctccacgaacaagcttcgttcgttgcccaatgagctaggtgacctcgtgcaa
ttgcgcgaattgctacttaataacaatctactgcacagcttgccctatgaactaggccga
ctattccagcttattacactggggctaaagggaaatccgctgtcaccggacattctttcg
ctgtattcggagccgaacggaacgcagaagctactgacgtacctccttgatagtcttcct
gcgtcgcaaagtggcgctccaacacgacattggcttagaaagaccgttgacccgccgcag
ggaaagtcggtattcacccaactgaccgtcatgtgttacaacgtgctgtgtgataagtac
gctacgcggacgatgtatggttactgcccatcgtgggccctcacctgggaatatcgccga
aagggcatcatggaggagattcgaagcaattcggctgatatcatcacgttacaggaggtt
gagaccgaacaattctacaactattttgagccggagctgaagcatgaaggatgggagggc
attttctcaccgaagtcgcgcgctaagtcgatgccggagacggatcgcaagcacgtcgat
ggttgtgccatattttataagacatccaagttcagtgtactcgataaacacctgatcgag
ttcaaccagttagcaatggccaacgcagaaggctcagacgatatgctcaatcgtgttatg
acgaaggacaacatttcgttggctgttctgctgcagctcaaggaacatcccgatgtgcct
gtgcttgtgtgtactgctcacatccattgggatccggagtactgtgacgtcaagctcatt
cagacgatgatgctgatgaacgagttgcagacgattcacgagaagagcaaggcacttgct
aagaccactgatataccgattatccttacgggggatctcaattcactgccagattctggt
gtcattgagtacctgcgaaacggtcgcattgcttgtgaccacccggactttaaggaactg
aactcataccggtcctgtttgaaaaaaatgaccgtagacagtaacagtcagcttggggcg
aattcctatacgcatccgttccagctcgaacaaggctacactgagaatgacatgccctac
acgaattacacgtacgattttcagggaatgattgactacattttcttcacgaagaagcag
attaccgttgcaggtatcctcggcccactcgaccccgaatggctcgctgaaaacaaggtg
attgggtgcccgcatcaggagatcccatctgaccacatcccgctcgtagcgcaactgcag
ctcttcaagtag
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