KEGG   Varroa jacobsoni: 111268407
Entry
111268407         CDS       T07417                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
vja  Varroa jacobsoni
Pathway
vja03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:vja00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111268407
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:vja03041]
    111268407
Spliceosome [BR:vja03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    111268407
 Complex C
   U5 SnRNP specific factors
    111268407
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_DCAF4 WDR90_beta-prop_4th WD40_RFWD3 Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_IFT140_1st WD_LRWD1 Beta-prop_DCAF12 Cytochrom_D1
Other DBs
NCBI-GeneID: 111268407
NCBI-ProteinID: XP_022703121
LinkDB
Position
Unknown
AA seq 362 aa
MSGYYSVAETRRIEAGGSAVMAYEPPNKRARGPNTELGLIGGSVNRAMQISKGARTSSLS
APIMLLTGHEKELFSGRFHPDGSFLASSGFDRMIFFWNTFGECENFHVMTGHTGAILDMH
FSTGGEFLYTCSTDKTLSIWDTQVGVRVRKLRGHTSYVNALHPARRGPQLVVSAGDDSTV
RLWDARRKTPVKTLQDHYQLTAISFNDTADQVITGGIDNVLKLWDLRKDQVVFRMHGHQD
TVTGLALSHHGGLVLSNSMDGTLRVWDVRPYAPPERCVALYQGHQHNFEKNLLRCSWSPD
DARISCGSADKCVYVWDFHSRRILYKLPGHLGSVNDVRFHPKEPIMLSVGSDKQIFLGEI
EP
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgtcaggctactattcagtagcggaaacgcgtaggatagaagccggaggaagcgctgtg
atggcttatgaaccccctaataaaagagccagaggcccaaatacggaattgggtcttatt
ggcggatctgtcaacagagcaatgcaaatttctaaaggtgcgcgaacatcgagtctatct
gcgccaatcatgcttctaacaggccatgaaaaagagctgttttctgggagattccatcca
gatggcagttttttagcgagctccggcttcgatcggatgatattcttctggaacactttc
ggcgagtgtgagaattttcatgtaatgaccggtcatacaggggctatactcgatatgcac
ttctctacaggcggtgaatttttgtacacgtgctcgacggataaaaccttgtctatctgg
gacacgcaagtgggcgttcgtgtccgcaaattacgtggtcacacgtcatacgtgaatgca
ctacatccggcacgccgggggcctcaacttgtggtatcggcgggagatgattcaacagtt
cgcctttgggatgcccgcaggaaaacacctgtgaaaacccttcaagaccactatcagctg
acagcgattagttttaatgacacagccgaccaggtgataactggcggcatagataatgtg
cttaagctttgggaccttagaaaagaccaggtggtgttccgaatgcatgggcatcaagat
acggtaaccggtctagctcttagtcatcatgggggtttggtactatcgaactcaatggat
ggaacgttacgggtttgggacgtgcgaccatatgcacctcctgagcgatgtgttgcgttg
tatcagggtcatcagcataacttcgagaagaatcttctgcgttgctcatggtcccctgat
gacgcgcgtatttcttgtggttcagcagacaaatgcgtttatgtgtgggactttcattcg
cgacgaattctttataaattgcctggtcaccttggctcagtaaatgatgtacgcttccac
cccaaagaaccaataatgctgtcggttggtagcgataagcagattttcttgggggaaatt
gaaccctaa

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